Corynebacterium sp. sy039: FQV43_03910
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Entry
FQV43_03910 CDS
T07955
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cory
Corynebacterium sp. sy039
Pathway
cory03030
DNA replication
cory03410
Base excision repair
cory03420
Nucleotide excision repair
cory03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cory00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FQV43_03910 (ligA)
03410 Base excision repair
FQV43_03910 (ligA)
03420 Nucleotide excision repair
FQV43_03910 (ligA)
03430 Mismatch repair
FQV43_03910 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cory03032
]
FQV43_03910 (ligA)
03400 DNA repair and recombination proteins [BR:
cory03400
]
FQV43_03910 (ligA)
Enzymes [BR:
cory01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FQV43_03910 (ligA)
DNA replication proteins [BR:
cory03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FQV43_03910 (ligA)
DNA repair and recombination proteins [BR:
cory03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FQV43_03910 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FQV43_03910 (ligA)
MMR (mismatch excision repair)
DNA ligase
FQV43_03910 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FQV43_03910 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QDZ42400
UniProt:
A0A5B8NWH5
LinkDB
All DBs
Position
859674..861761
Genome browser
AA seq
695 aa
AA seq
DB search
MTERLTAENTQPHDGQYQGVDADTRRQWNELVEQIRQHRHAYYNETPLISDAQFDALFRQ
LEQLEEKYPELAVPESPTMNVGAPIAKQSSFANVEHIERMLSLDNAFSKAELQEWCARTP
ASRYLIELKIDGLSLDLVYRNGKLERAATRGDGRIGEDVTENAKVIESIPHELVESSDYV
IPELLEVRGEVFIAVADFAAVNEQRQREGGKPFANPRNAAAGSIRQKDVQAVKKRKLRMV
CHGIGALEGIQLSSQHDAYKALAAWGLPVSEHTQLVDSPEAIVDQVDYWAKHRHEAIYEM
DGLVIKVDDIAAQRSLGATARAPRWAIAYKYPPEEVTTKLLDIQVGVGRTGRVTPFAVME
PVFVAGSTVAMATLHNQTEVKRKGILIGDTIVIRKAGEIIPEVLGPVVEKRDGSERAFVF
PQHCPSCGAVLAPQKEDDADWRCPNARSCPAQLSARLTYLAGRGAFDIEALGEKGAQDLI
ASKVLDNEAGLFNLTEDDLLKTKVYTTKAGEVNATGKKLLKNLEEVKKVELWRVIVALSI
RHVGPTAARALAHKFQSLPAARQAQVNELADTDGVGEIIAQSFKEWFSIDWHQDIVTQWE
RAGVTMETDSSQRLAQTLSGKSIVVTGTLQHFTRDSAKEAIIARGAKAVGSVSKKTDYVV
VGDNAGSKAQKAQDLGITILDEDAFIALLETGSTA
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
atgactgagcgactcactgcagaaaatacacagccgcatgatggacaatatcaaggagta
gatgcagatactcgtcggcaatggaatgagcttgtcgagcaaatccgccagcaccgtcat
gcctactacaatgagactcctctcattagcgatgcacagttcgacgcactctttaggcaa
ttagagcagttagaagaaaaatatccagaacttgctgttcctgaaagtccaacgatgaat
gttggcgctcccattgcaaaacaatcgagttttgccaatgtggaacatattgaaagaatg
ttgagccttgataatgcgtttagcaaagcagagttgcaagaatggtgcgcccgtactccg
gcgagccgatatcttattgaattaaaaattgatggactttcccttgatttggtgtatcgc
aatggaaaattagaacgcgccgcgacgaggggggatggcagaattggcgaggatgtcaca
gaaaacgccaaggtcattgagagcattccgcatgagctggttgagtcgtcagattatgtt
atcccagagctgttagaagtacgtggcgaagtgttcatcgctgttgcagacttcgcagct
gttaatgaacaacgtcagcgcgaagggggtaagccttttgccaatccaagaaatgctgct
gcaggttcgattcggcaaaaagatgtgcaagcagtgaaaaaacggaaattgcgcatggtc
tgtcatggtattggtgcattagaaggcatccaattatcatcacagcatgatgcgtataag
gcattggcggcatgggggttgccggtgtcggaacatacgcaactcgtcgatagtccagaa
gcaatagtagaccaggtggattattgggcaaaacatcgtcatgaggctatttacgaaatg
gatggtcttgtgatcaaagttgatgatattgctgctcaacgcagtctcggtgctactgca
cgtgcgccgagatgggctattgcgtataaatatccgcctgaggaagtcaccacaaagtta
cttgatattcaagttggtgttgggcgtactggcagagttactccttttgctgtgatggaa
ccagtttttgttgctggatctacggttgctatggctacactgcataatcagacagaggtg
aaacgtaaggggatactcatcggcgataccattgtgattcgtaaagccggagagatcatc
ccagaagtgctagggcctgtcgtcgaaaagcgtgatggtagtgaacgagcttttgtcttt
ccacaacattgtccttcgtgtggggcggttcttgcgccgcaaaaagaagatgatgcggat
tggcgttgtccgaatgctcgctcttgtccagcacagttgagtgcgcgtttgacctattta
gctggtcgtggtgcctttgatattgaggcattgggggagaagggggcgcaagatcttatt
gcatccaaggtgcttgataatgaagctggattattcaatttgaccgaggatgatctgctt
aaaaccaaggtgtataccacgaaagcaggagaggttaatgccacaggaaagaagctgctg
aaaaatcttgaagaagtaaaaaaggtggagttgtggcgcgttattgtggcgttgtcaatt
aggcatgtgggacctactgctgctcgcgcgttggcacataagtttcaatctttgcctgca
gcacgccaggcgcaggtgaatgagttagctgatactgacggggtgggtgagattattgcc
cagagtttcaaggaatggttcagtatcgattggcatcaggatattgtcacgcaatgggaa
cgcgcaggtgtgacgatggaaactgatagtagtcagcgtctagcacaaacactcagtggt
aagagcattgtggtcactggtacgttgcagcacttcactcgagattcagcgaaggaggca
attattgctcgcggtgctaaggcagtgggttcggtatccaagaaaactgattatgtggtg
gttggagataatgctggctctaaagcgcaaaaagcacaggatctgggcataacaatactg
gatgaagatgctttcattgcgctcttagagacaggttcgactgcctag
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