Lodderomyces orthopsilosis: CORT_0G01870
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Entry
CORT_0G01870 CDS
T02488
Name
(RefSeq) Smx4 component of heteroheptameric complexes (Lsm1p, Lsm8p)
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
cot
Lodderomyces orthopsilosis
Pathway
cot03018
RNA degradation
cot03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cot00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CORT_0G01870
09123 Folding, sorting and degradation
03018 RNA degradation
CORT_0G01870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cot03019
]
CORT_0G01870
03041 Spliceosome [BR:
cot03041
]
CORT_0G01870
Messenger RNA biogenesis [BR:
cot03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CORT_0G01870
mRNA degradation factors
5'-3' decay
Lsm complex
CORT_0G01870
Spliceosome [BR:
cot03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CORT_0G01870
Complex C
U2 snRNP components
CORT_0G01870
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
RimP_C
Motif
Other DBs
NCBI-GeneID:
14542119
NCBI-ProteinID:
XP_003870996
UniProt:
H8XAM0
LinkDB
All DBs
Position
7:complement(385859..386134)
Genome browser
AA seq
91 aa
AA seq
DB search
MSSVQTEHKQQQEPLDLIRFQLDEYVIVKLRGAREFKGKLQGYDSHCNLVLSDATETIFS
DKDGVDPIIKRTEMVFVRGDSVILISPVIEK
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcagtgcaaacggaacacaaacagcaacaagaacccctcgacttgatacgattt
caacttgatgaatacgtgattgttaaattaagaggcgctcgagaatttaaaggtaaatta
caaggttatgatagtcattgtaatttggtattaagtgatgctacagaaacgatattttct
gataaagatggtgttgatccaataataaagagaacagagatggtttttgttagaggagat
tctgtgatattaataagtcccgttatagaaaagtaa
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