Cupriavidus oxalaticus: E0W60_19985
Help
Entry
E0W60_19985 CDS
T06004
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cox
Cupriavidus oxalaticus
Pathway
cox03030
DNA replication
cox03410
Base excision repair
cox03420
Nucleotide excision repair
cox03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cox00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E0W60_19985 (ligA)
03410 Base excision repair
E0W60_19985 (ligA)
03420 Nucleotide excision repair
E0W60_19985 (ligA)
03430 Mismatch repair
E0W60_19985 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cox03032
]
E0W60_19985 (ligA)
03400 DNA repair and recombination proteins [BR:
cox03400
]
E0W60_19985 (ligA)
Enzymes [BR:
cox01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E0W60_19985 (ligA)
DNA replication proteins [BR:
cox03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E0W60_19985 (ligA)
DNA repair and recombination proteins [BR:
cox03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E0W60_19985 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E0W60_19985 (ligA)
MMR (mismatch excision repair)
DNA ligase
E0W60_19985 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E0W60_19985 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QBY53371
UniProt:
A0A4P7LMB5
LinkDB
All DBs
Position
2:complement(1985773..1987902)
Genome browser
AA seq
709 aa
AA seq
DB search
MTAKPRGAQAEASAPAGGLPPEAAARRVAWLHDELNRHSYQYYVLDAPTIPDAEYDALFA
ELMALELEHPELQSPDSPTQRVGGEALAAFDTVRHRVPMLSLNNGFADDDVLNFDRRCAQ
GLGRTAPAAGEADLFSAADAVEYSCELKFDGLAMSLRYEDGRLVQAATRGDGETGEDVTV
NVRTIKAIPLKLRGQAPAVLEVRGEVFMYRRDFAKLNARQAEAGEKTFVNPRNAAAGSLR
QLDPRITAKRPLSFFAYGLGELQGVDRPPTHSAMLDGFDALGLPVCKERAVVKGAQGLLG
FYRDIGERRDDLPYDIDGVVYKVNALAEQDRLGFVSRAPRFALAHKFPAQEMTTIVEDIE
VQVGRTGAITPVARLQPVFVGGVTVTNATLHNEDEIRRKDVHIGDTVIVRRAGDVIPEVV
AVVVERRPADARAFVMPTACPVCGSHIERLEDEAIARCTGGLICAAQRKQALLHFAQRRA
MDIEGLGDKVVEQLVDQGIVRTPADLYKLGVAKLAALERMADKSATNLVAAIEASRETTL
NRFIFALGIRHVGEATAKDLARHFGKLDGLMAADEAALLEVNDVGPVVAQSIAHFFGEPH
NVEVIEQLRAAGVHWPESEPAARTPAPLSGKTFVLTGTLPTMSREDAKELLEAAGAKVAG
SVSKKTDYVVAGAEAGSKLDKAEALGVPVLDEAGMLALLAEAGAAPAQD
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaaaaccacgcggcgcgcaggctgaagcctccgcgcccgccggcggcttgccg
cccgaagccgcggccaggcgcgtcgcctggctgcacgacgagctcaaccgccacagctac
cagtactacgtgctggacgcgcccaccatcccggatgccgagtacgacgcgctgttcgcc
gaactgatggcgctcgagctggagcatcccgagctgcagtcgccggattcgcccacgcag
cgcgtcggcggcgaggcgctggccgccttcgacacggtgcgccaccgcgtgccgatgctg
tcgctgaacaacgggttcgccgacgacgacgtgctcaacttcgaccgccgctgcgcgcag
ggcctgggccgcaccgcacccgcggcgggcgaggccgacctgttcagcgcggctgacgcg
gtggagtactcctgcgagctgaagttcgacgggctggccatgtcgctgcgctatgaagac
ggccggctggtgcaggccgccacccgcggcgacggcgagaccggcgaggacgtgaccgtc
aacgtgcgcaccatcaaggcgatcccgctgaagctgcgcggccaggcgccggcggtactg
gaagtgcgcggcgaggtcttcatgtatcgccgcgatttcgccaagctcaacgcgcgccag
gcggaagccggcgaaaagaccttcgtcaatccgcgcaacgccgctgccggcagcctgcgc
cagctcgatccgcgcatcaccgcgaagcggccgctgtcgttcttcgcctatggcctgggc
gagctgcagggcgtggaccgcccgcccacgcacagcgccatgctcgacggcttcgatgcg
ctgggcctgccggtgtgcaaggaacgcgccgtggtcaagggggcgcagggattgctcggt
ttctaccgcgatatcggcgagcgccgtgatgacctgccatacgatatcgacggcgtggtc
tacaaggtcaacgcgctggccgagcaggaccggctgggctttgtctcgcgcgcgccgcgc
tttgcgctggcgcacaagttcccggcgcaggaaatgaccaccatcgtcgaggacatcgag
gtgcaggtcggccgtaccggcgcgatcacgccggtggcgcggctgcagccggtgttcgtc
ggcggcgtgaccgtgaccaatgccacgctgcataacgaggacgagatccgccgcaaggat
gtccatatcggcgataccgtgatcgtgcgccgcgccggtgacgtgatcccggaggtggtg
gcggtggttgttgagcgccgtccggcggatgcgcgcgccttcgtgatgccgacggcctgc
ccggtgtgcggttcgcatatcgagcggctggaagacgaggcgatcgcgcgctgcaccggc
ggcctgatctgcgcggcacagcgcaaacaggcgctgctgcattttgcgcagcgccgtgcc
atggatatcgaagggctgggcgacaaggtggtcgagcagctggtggaccagggcatcgtg
cgcacgccggccgacctgtacaagcttggcgtggccaagctggcggcgctggagcgcatg
gccgacaagtcggcgaccaacctcgtcgcggcgatcgaggcgtcgcgcgagacgacgctg
aaccgctttatcttcgcgctcggcatccgccacgtgggcgaggccaccgccaaggatctc
gccaggcatttcggcaagctcgacgggctgatggccgccgacgaagccgcgctgctcgag
gtcaacgacgtcggcccggtggtggcgcagtcgatcgcgcacttctttggcgagccgcat
aacgtcgaggtcatcgaacaactgcgcgccgcaggcgtacactggccggagagcgagccg
gccgccaggacgccggcgccgctgtcgggcaagaccttcgtgctgaccggcacgctgccg
acgatgtcgcgcgaggacgccaaggaattgctagaggccgcgggcgccaaggtggcgggc
tcggtgtcgaagaagaccgactatgtggtcgctggcgccgaagccggcagcaagctggac
aaggccgaggcgctgggcgtgccggtgctggacgaggccggcatgctcgcgttgctggca
gaagcgggcgccgcgcccgcgcaggattag
DBGET
integrated database retrieval system
