Chitinophaga oryzae: HF329_23720
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Entry
HF329_23720 CDS
T07451
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
coy
Chitinophaga oryzae
Pathway
coy03030
DNA replication
coy03410
Base excision repair
coy03420
Nucleotide excision repair
coy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
coy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HF329_23720 (ligA)
03410 Base excision repair
HF329_23720 (ligA)
03420 Nucleotide excision repair
HF329_23720 (ligA)
03430 Mismatch repair
HF329_23720 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
coy03032
]
HF329_23720 (ligA)
03400 DNA repair and recombination proteins [BR:
coy03400
]
HF329_23720 (ligA)
Enzymes [BR:
coy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HF329_23720 (ligA)
DNA replication proteins [BR:
coy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HF329_23720 (ligA)
DNA repair and recombination proteins [BR:
coy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HF329_23720 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HF329_23720 (ligA)
MMR (mismatch excision repair)
DNA ligase
HF329_23720 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HF329_23720 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QJB34131
LinkDB
All DBs
Position
6159247..6161352
Genome browser
AA seq
701 aa
AA seq
DB search
MYTKEIEITLAQLAKDLLKHQQQQTLLHSIDETLEALRRVISYNDWRYYVQSDPVLSDYE
YDQLFAWLKKLEQERPDLISPDSPTQRVAKGLTKEFVTVQHLVPMLSLENSYNADDLIDW
DRKAREASGLQEIEYCIEPKFDGASISLIYENDRLSRGATRGDGIAGEDITTNIRQIRSI
PLSASFSQYGIHQIEIRGEVLINKNTFKAFNDKRVAENLPPLANPRNAASGSLRMVDPNE
VAKRGLEAFLYHMSFHSMEAGREEPDAIKTHSGTLDLLSTLGFRSPAKEKKVVKGVQAVI
DYCLQFETERDNLPYEIDGMVIKVNDYALQDKLGMTTHHPRWAIAYKFKARQATSRLRAV
EFQVGRTGSITPVAKIDPVHIGGVTVSSISLFNEDVIREKDLKLGDMVLVERAGDVIPYI
VKSVADLRTGEEKDIVFPTQCPVCSDQLVKPEGESVWRCTNINCEAQVVERMIHFVSKDA
MDIKSFGESNVRKFYAQGLMKDIPGIYELDFEKIGAMEGFGKKSLSNLQTAIEQSKTQPL
HRLIFGLGIRYVGETTAKTLANAVTNIMDLRHWTEEQILALEDIGPKVAGSIRVFFTNDD
NIHMLEKLASLGINMTNTKSERHTGGNLADQTFLFTGTLHKLKRSEAEEMVEQQGGKIMS
GVSSKLNYLVVGEEAGSKLEKAKKINTIRIITEDEFLEMIK
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtacacaaaggaaatagaaataaccctggcacagctggccaaagacctgctgaagcat
cagcagcaacaaacgttgctgcattccattgacgaaaccctggaggcattgcgccgcgtc
atctcttacaatgactggcgttattatgtacagagcgatcctgtgctcagcgactacgaa
tatgaccagctctttgcctggctcaaaaaactggaacaggaacgcccggacctcatcagt
cccgactcccccacccagcgtgtggccaaaggcctcaccaaagaatttgtgaccgtacag
cacctggtgccgatgctgagcctcgaaaactcctacaacgccgacgacctcattgactgg
gaccgcaaagcccgggaggccagcggactgcaggaaatagaatactgcatcgagcctaaa
ttcgacggcgccagcatctccctcatttatgagaacgaccggctctccagaggcgctacc
cgcggcgatggcatcgccggtgaagacatcaccaccaatatccgccagatacgttctatt
ccgctgtctgccagcttctcccaatatggtatccaccagatagaaatacggggggaagtg
ctgatcaataaaaacactttcaaggcgttcaatgacaaacgtgtcgctgaaaacctgcca
ccgctggccaatccccgcaacgccgcctccggctcgctgcgcatggtagatcccaacgaa
gtggccaaacgcggactggaagccttcctttatcacatgagctttcattccatggaagcc
ggccgggaagaaccggatgccatcaaaacacacagcggcacccttgacctgctgtcaacc
ctcggtttccgcagccctgccaaagagaaaaaagtcgtcaaaggcgtacaagccgtgatc
gactactgccttcagtttgaaacagaacgtgacaacctgccgtacgaaatcgacggcatg
gtgatcaaggtaaatgattatgccctgcaggacaaactgggtatgaccacccaccacccc
cgctgggccatcgcctataagttcaaagcccgccaggccaccagccgcctgcgcgccgtg
gaattccaggtaggccgtaccggctccatcacgccggtcgctaaaatagatcctgtccac
attggcggcgtaacggtatcctccatctccctgttcaatgaagacgtgatccgggaaaaa
gacctgaagctgggcgacatggtactggtagaaagagccggcgacgtgatcccctatatt
gttaagtccgtggccgacctccgtaccggcgaagaaaaggatatcgtattccccacacag
tgccccgtttgcagcgaccaactcgtgaaacccgaaggagaaagcgtttggcgctgtacc
aacatcaactgtgaagcacaggtcgtggaacggatgatccacttcgtgagcaaagatgcc
atggacattaaaagcttcggcgaaagcaatgtccgcaagttctatgcgcagggcctcatg
aaagacatccccggcatctatgagctggacttcgaaaaaataggcgctatggaaggcttt
ggcaaaaaatcgctcagcaacctgcaaacagcgatcgaacagtccaaaacacaacccctg
caccgcctcatcttcggcctcggtatccgttatgtcggcgaaaccaccgccaaaacactg
gccaatgccgtcaccaacatcatggacctgcgccactggacagaagaacaaatactggcg
ctggaagatatcggccctaaagttgcgggttctatccgcgtcttcttcaccaacgacgat
aacatccatatgctggaaaagctggcgtcgctgggcatcaatatgaccaacaccaagagt
gaacgccataccggcggcaacctcgctgaccagaccttcctcttcacaggtaccctgcac
aagctgaagcgcagcgaagcagaagaaatggtggagcaacagggcggtaaaatcatgagc
ggcgtgagcagtaaactcaactatctcgtggtaggcgaagaggccggcagcaaactggaa
aaagcgaagaaaatcaacaccatcaggattatcacggaagatgagttcctggagatgatt
aaatag
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