Chlamydia pneumoniae AR39: CP_0624
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Entry
CP_0624 CDS
T00029
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpa
Chlamydia pneumoniae AR39
Pathway
cpa03030
DNA replication
cpa03410
Base excision repair
cpa03420
Nucleotide excision repair
cpa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CP_0624
03410 Base excision repair
CP_0624
03420 Nucleotide excision repair
CP_0624
03430 Mismatch repair
CP_0624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpa03032
]
CP_0624
03400 DNA repair and recombination proteins [BR:
cpa03400
]
CP_0624
Enzymes [BR:
cpa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CP_0624
DNA replication proteins [BR:
cpa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CP_0624
DNA repair and recombination proteins [BR:
cpa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CP_0624
NER (nucleotide excision repair)
GGR (global genome repair) factors
CP_0624
MMR (mismatch excision repair)
DNA ligase
CP_0624
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CP_0624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
HHH
DNA_ligase_ZBD
HHH_3
PTCB-BRCT
RNA_pol_A_CTD
DUF2157
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AAF38439
UniProt:
Q9Z934
LinkDB
All DBs
Position
complement(653498..655486)
Genome browser
AA seq
662 aa
AA seq
DB search
MKEENSQAHYLALCRELEDHDYSYYVLHRPRISDYEYDMKLRKLLEIERSHPEWKVLWSP
STRLGDRPSGTFSVVSHKEPMLSIANSYSKEELSEFFSRVEKSLGTSPRYTVELKIDGIA
VAIRYEDRVLVQALSRGNGKQGEDITSNIRTIRSLPLRLPEDAPEFIEVRGEVFFSYSTF
QIINEKQQQLEKTIFANPRNAAGGTLKLLSPQEVAKRKLEISIYNLIAPGDNDSHYENLQ
RCLEWGFPVSGKPRLCSTPEEVISVLKTIETERASLPMEIDGAVIKVDSLASQRVLGATG
KHYRWALAYKYAPEEAETLLEDILVQVGRTGVLTPVAKLTPVLLSGSLVSRASLYNEDEI
HRKDIRIGDTVCVAKGGEVIPKVVRVCREKRPEGSEVWNMPEFCPVCHSHVVREEDRVSV
RCVNPECVAGAIEKIRFFVGRGALNIDHLGVKVITKLFELGLVHTCADLFQLTTEDLMQI
PGIRERSARNILESIEQAKHVDLDRFLVALGIPLIGIGVATVLAGHFETLDRVISATFEE
LLSLEGIGEKVAHAIAEYFSDSTHLNEIKKMQDLGVCISPYHKSGSTCFGKAFVITGTLE
GMSRLDAETAIRNCGGKVGSSVSKQTDYVVMGNNPGSKLEKARKLGVSILDQEAFTNLIH
LE
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagagaattcacaagcacactacttagctttatgtcgtgaattagaagaccat
gattattcttattatgtgttgcatcgtcctagaatctctgattatgaatatgacatgaaa
ttacggaagcttcttgaaatagagagaagtcatcccgaatggaaagtcttatggtctccc
tcaacacgtctcggagatcgtccctctggaactttttctgtggtttcccataaggaaccg
atgctttccattgccaatagctattctaaagaagaactaagtgagtttttttctagggta
gaaaaatccctaggtacaagtccacgttatacagtagaacttaaaatcgatgggattgca
gtagcaatacgttatgaagatcgtgtgttggttcaagcactcagccgaggaaatggaaag
cagggagaggatatcacatcgaatattcgaacaatacgctccttgcctttaagacttcca
gaagatgctccagagtttattgaagtacgtggcgaggtcttcttctcttattctacgttt
caaattatcaatgagaagcagcaacaattagagaaaactatttttgccaacccgagaaat
gctgcaggaggtaccttaaagttactttctcctcaagaagtcgcaaaacgtaaattagaa
atttctatctataatctcattgctccaggagataacgattctcattatgaaaatcttcag
cgctgccttgaatggggatttcctgtatctggtaaaccaagattgtgctctaccccagag
gaagtgatctcagttttaaagactatagaaactgagagagcttccttgcctatggaaatc
gatggtgctgtcatcaaggtagacagtttggcaagtcagagagttcttggagccacaggg
aaacactatagatgggccttagcttataaatatgccccagaggaagcagagacccttctt
gaggatattctagttcaagtaggaagaacgggagttctgactcctgtagctaaactcact
cctgtactgttgtcagggtctttagtatctagagcgtctctatacaatgaagatgagatt
catagaaaagacatccgtattggtgataccgtttgtgttgctaaaggtggagaggtgatt
ccaaaagtagttcgggtatgcagagaaaaacgtcctgaaggttctgaagtttggaatatg
cctgaattctgccctgtctgccatagtcacgtagttcgggaagaagatagagtttctgtg
cgttgtgtcaatcctgagtgtgttgcaggagctattgaaaaaattcgtttttttgttggt
cggggagctttaaatatcgatcatttaggggtgaaggtaatcacaaagctgtttgaatta
gggttagtgcacacgtgtgcggacctatttcagctgactactgaagatttaatgcaaatt
cccgggatacgggaacgctctgcaagaaatattctagagagtatcgagcaagctaaacat
gtggatctagatcgttttcttgttgctctggggattcctctcattggaattggtgttgct
actgtactagctggccacttcgagactttagatcgggtaatttccgcgacttttgaagaa
cttctttcactagagggtattggagagaaggtggctcatgctattgctgagtatttttca
gactctacgcatcttaacgaaatcaagaaaatgcaggatttaggagtgtgtatatctcct
tatcataaatcaggatctacgtgttttggcaaggcttttgtgatcacagggacgttagag
ggaatgtctcggttagatgcagaaactgctatccggaattgtgggggtaaggtaggctcc
tctgtctcgaaacagaccgattacgtagttatggggaataacccaggatctaaattagag
aaggctaggaaattgggagtctctatcttagatcaagaagcctttacaaatctaattcat
ttagaataa
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