Chlamydophila parapsittaci: FI836_00660
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Entry
FI836_00660 CDS
T09727
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpaa
Chlamydophila parapsittaci
Pathway
cpaa03030
DNA replication
cpaa03410
Base excision repair
cpaa03420
Nucleotide excision repair
cpaa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FI836_00660 (ligA)
03410 Base excision repair
FI836_00660 (ligA)
03420 Nucleotide excision repair
FI836_00660 (ligA)
03430 Mismatch repair
FI836_00660 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpaa03032
]
FI836_00660 (ligA)
03400 DNA repair and recombination proteins [BR:
cpaa03400
]
FI836_00660 (ligA)
Enzymes [BR:
cpaa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FI836_00660 (ligA)
DNA replication proteins [BR:
cpaa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FI836_00660 (ligA)
DNA repair and recombination proteins [BR:
cpaa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FI836_00660 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FI836_00660 (ligA)
MMR (mismatch excision repair)
DNA ligase
FI836_00660 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FI836_00660 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_3
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QDE37654
LinkDB
All DBs
Position
complement(153873..155855)
Genome browser
AA seq
660 aa
AA seq
DB search
MQSTYSREQYLSLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSIEAQHPEWKVLWSP
SMRLGDRASGSFPIVAHAHPMLSIANAYTLEELYEFFSRMEKALGYTPKYTLEIKIDGIA
VALRYEQRVLLQALSRGNGRKGEDITANIRTIRTLPLRLSKEAPEFLEVRGEVFFSRATF
RQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEAAQRNLEISIYGSLAEENKRSHYENLL
LCREWGFPVLGQPRQCQTIDEVVASLHEIEALRDQLPMEIDGVVIKVDDIEDQKVLGMTA
KHYRWALAYKYAPERAETILEDILVQVGRTGVLTPVAKLRPVVLSGSRVSRASLYNEDEI
ERKDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGSQPWVMPEYCPVCHGKVTRESDKVSV
RCTNPLCSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFDLGCIHRRCDIFQITEEDLRHV
PGFKDKSIRNVLKSIEKAKSVPLDRFLTALGIPYVGIGGANALAQHFLSLESVMSASLDD
LKSVEGIGDKVAESIVAYFNQPEHREEIQIMLSLGVHVLPYRRESSSCLGKTFVITGSLE
KLTRSEAETYIRNCGGKVGSSVSKNTDYLVVGKDPGSKLQKAQELEIPILSEDELLKILY
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgcaaagtacatattccagagaacaatatctctctctgtgtaaagatatcgaagaagat
gattatcgctattatgttcttcataatcccacaatctcagattatgactatgatatgaaa
atgcggcagcttctttctatagaagcgcagcatcctgaatggaaggtattatggtctcca
tcgatgcgtcttggggatcgagcttcaggaagctttcctattgtagctcatgcccacccc
atgctttctattgctaatgcctatactttagaagagctttatgagttcttttcccgtatg
gagaaagcgttggggtataccccgaaatacactctagaaataaaaatagatggtattgcc
gtagctcttcgttatgagcagagagtccttttacaagctttaagccgtgggaatggacgt
aagggagaggatatcacagcaaatatccgtacgatacgcacgcttcccctacgtttatca
aaagaggctccagaatttctagaagttcgaggtgaagtatttttttcacgagcaactttt
cgtcagattaatgcggcacaaaggcaagcggagaaacctgaatttgctaatccaagaaat
gctgctggtggcactttgaaattgttgtctgctaaggaagcagcacaaagaaacttagaa
atttctatttatggatcgttggcagaagagaataagcgatcacattatgagaatctcctg
ttgtgtagagagtggggattccccgtattgggtcagccacgtcaatgccaaactatcgat
gaagtcgtcgcctctctccatgagatagaagctttgcgagatcaacttcccatggaaatc
gatggtgtggtgatcaaagtagatgatatagaagatcaaaaagtcttgggaatgacggcg
aagcattatcgctgggcactcgcatacaagtatgcgccagaacgcgctgaaactatttta
gaagatatcttagttcaagtaggcagaacgggagtattgaccccagtggctaagctgcga
cctgtagttttgtcaggatctagagtttctagggcttctctatacaatgaagatgaaatt
gagagaaaagatatccgtataggtgacaccgtatatgtagagaagggcggagaaattatt
cctcaagttgttggtgtttgcctagaaaagcgtccggaaggctcacagccttgggttatg
cccgaatactgtcctgtgtgtcatgggaaggtaactcgcgaatccgataaagtttctgtt
cgttgtacgaaccccctgtgttctgcaggagttattgaaaaaatccgctttttttgtgga
agagatgctttagatattgatcatcttggtgaaaaggttgttacgaagctatttgattta
gggtgtattcatcgacgctgtgatatttttcaaatcactgaagaagatctccgccatgtt
ccaggatttaaagataaatccataagaaacgtccttaaaagtatagagaaagctaaaagt
gtgcctttagatcgttttcttactgctttgggtattccttatgtgggtataggcggagcc
aacgctcttgcacaacattttctttctttagagtctgtgatgtctgcctctttggatgat
ctaaaatctgtagagggaattggagataaagttgcagaatctatagttgcttattttaat
caaccagaacatcgcgaagagattcaaataatgctttctctaggggtgcatgttttacct
taccgcagggaaagttcttcgtgtttagggaaaaccttcgtaattacgggcagtcttgaa
aaattgacgagatccgaagcagaaacttacattcgcaattgtggaggtaaggtaggttct
tccgtgtctaaaaacaccgactatcttgttgtgggcaaggatcctgggtccaagttacaa
aaggcccaagaactggaaattcccattcttagtgaggatgagctgttaaaaattctttac
taa
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