Carica papaya (papaya): 110809667
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Entry
110809667 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
cpap
Carica papaya (papaya)
Pathway
cpap04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
110809667
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110809667
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
110809667
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
110809667
NCBI-ProteinID:
XP_021891249
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All DBs
Position
Unknown
AA seq
740 aa
AA seq
DB search
MGVPAFYRWLADRYPRSIIDVIEEEPREGPNGVAIPIDVSRPNPNGLEFDNLYLDMNGII
HPCFHPEGKPAPATYDDVFKSIFEYIDHVFSLVRPRKLLFMAIDGVAPRAKMNQQRSRRF
RAAKDAAAAEAEEERLRKEFESEGRNLFPKEKAETSDSNVITPGTQFMAMLSVALQYYIQ
SRLNLNRGWWPTKVILSDSNVPGEGEHKIMSYIRLQRNLPGYDPNTRHCLYGLDADLIML
SLATHEVHFSILREVVTLPGQQEKCFACGQVGHLAAECRGKPGDEAEDWNVVDDTPIYKK
KYQFLHIWVLREYLLHDLAIPDPPFVINFEKIVDDFVFMCFFVGNDFLPHMPTLEITEGA
INLLMHVYRREFASMGGYLTDSGEVLLDRVEHFIQSVSVNEDQIFQKRTRIQQFSLCKIQ
SFRKRHYSGKLISNPSXMYFLSQIKLGEPGYKERYYTEKFDLSNPEEIDQVKNDVVLKYV
EGLCWVCRYYYQGVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFKPFDQLMGTLPA
ASANALPEEYRKLLINPSSPICKFYPSDFEIDMNGKRFAWQGVAKLPFIDEKKLLAETRK
LEATLTEEEQFRNSVMLDLLYVHAAHPLARQISAYYEFFNLVPPAQRYLWTIDTNVSGGM
NGYIWLCQRNALKSIVISPINGLPNIAPNQVLNVTYLNPPYHKHIPEPPRGVIMPKKVNF
KCPWDLLVLSVGNMKTNGFI
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccctgcgttttacaggtggcttgcagatcggtaccctcggtccataatcgac
gtcatagaagaggagccgagggagggcccgaatggcgtcgcgataccaattgacgtttcg
agacctaaccctaacggcctggaattcgataacttgtacctcgacatgaacgggattatc
catccctgttttcatcccgagggcaagcctgcaccagccacttatgatgatgtgttcaaa
tcaatatttgagtatattgaccatgtcttctcattggttcgcccgaggaagcttcttttc
atggccatagatggggttgcaccaagagcaaaaatgaatcaacagcgatctcgtcgcttt
agagctgcaaaagatgcagctgcagcagaagctgaagaggagagattgaggaaagaattt
gagtctgaggggagaaacttgttccctaaagaaaaggctgagacatcagattcaaatgtc
atcactcctggcacccaatttatggctatgctatcagtagcacttcaatattacatacaa
tctaggttgaacctgaaccgtggctggtggccaacaaaggttattctttctgattcaaat
gttcctggtgagggagaacacaaaatcatgtcatatattcgactacaacgtaatcttcct
ggttatgatccaaacactcggcattgtttatatggtctggatgcagatttgatcatgctg
tctttagctactcatgaggttcacttctcaatattaagagaggtggtcacccttcctggg
caacaggaaaaatgttttgcctgtggtcaagttggtcatctggcagcagagtgtcgtggc
aagccaggtgatgaagctgaagattggaatgtagtggacgataccccaatttataagaaa
aaatatcagtttcttcatatttgggtgttgcgagaatatttactacatgatttggcgatc
cctgatcctccatttgtgataaactttgagaaaatagtagatgactttgtgtttatgtgt
ttctttgtgggcaacgactttcttccacatatgccaactttggaaattacagagggtgct
ataaatttactgatgcatgtttatagaagggaatttgctagtatgggtggttatctgact
gattcgggtgaggtgttgttggatagagtagaacattttattcagtctgtttctgttaat
gaagatcaaatatttcagaagaggactcgtatacagcagtttagcctatgcaaaatccag
tcttttaggaagaggcattattctgggaaattaatttccaatccaagttaaatgtatttt
ctttctcagattaaattgggggaacctggatataaggaaaggtactatactgagaaattt
gatctatcaaatccagaggaaattgatcaagttaaaaatgatgtggtgttgaaatatgtg
gaaggtttatgttgggtttgccgctactactaccagggtgtatgctcatggcaatggttt
tatccttatcattatgctccttttgcttcggatcttaaagatctctctgatttagaaata
acatttttcttgggagaaccatttaaaccctttgatcagctaatgggaaccctaccagct
gcaagtgcaaatgcattgccagaagaatacagaaaattgttgattaatccatcctcgcct
atctgtaaattttatccttctgattttgaaatcgacatgaatggtaaacggttcgcatgg
cagggtgttgccaaattgccattcattgatgagaagaaattgctagctgagacaagaaag
cttgaagccacgttaacggaggaagagcagtttcggaatagcgtgatgcttgatttgcta
tatgtacatgccgctcatcctttggcacgtcagattagtgcatactatgaattttttaat
ctagtacccccagctcaaagatatctttggacaattgacacaaatgttagtggtggaatg
aatggatatatttggttatgtcagaggaatgcactaaagagcatagttatatccccaatc
aatggattgccaaatatagctcctaatcaagtgttaaatgttacgtatcttaatccccct
tatcacaagcatataccagaacctccaaggggagtgataatgccgaaaaaggtaaatttt
aaatgtccttgggatttgttggtattatctgtaggaaatatgaaaacaaatggctttatc
tga
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