KEGG   Carica papaya (papaya): 110817539
Entry
110817539         CDS       T05151                                 
Name
(RefSeq) DNA-directed RNA polymerase IV subunit 1
  KO
K16250  DNA-directed RNA polymerase IV subunit 1 [EC:2.7.7.6]
Organism
cpap  Carica papaya (papaya)
Pathway
cpap03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:cpap00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    110817539
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cpap03021]
    110817539
Enzymes [BR:cpap01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     110817539
Transcription machinery [BR:cpap03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     110817539
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 RNA_pol_Rpb1_5
Other DBs
NCBI-GeneID: 110817539
NCBI-ProteinID: XP_021901821
LinkDB
Position
Unknown
AA seq 1210 aa
MDSDLCGEQEVPSAVLTGINFSVSVDKEKVCLEKICVASEVTDPKLGLPNPSSECLTCGA
KDLKHCEGHFGVIQFPYTILHPYYLSEVVQILNKVCPACKSLREDLWIKGPDSLSIDQPK
GCKYCVGNSLNWYPPMKFKVLSEDIFRLSAIMVEVNENVLRKFQKRRKEALPADYWDFLP
KDSHQEESGTRPNRRILSHAQVHFLLKAIDPKLIRKFILRPDSLFLNYFPVTPNSHRVTE
LTYMFSSGQRLFFDERTGAYKKLVDFRGTSNELSSRVLGCLKISKLHTFKSSSKDATTAL
LKNEDSSNMVGLRYMKDVLLGKRNDSSFRTVVIGDRSLKLSEIGIPCHIAESLQISENLN
NWNWDKLISSCDLRLLEKGEIHVRRKNSLISLRRISDLRMGDIISRPLKDGDILLINRPP
SIHPHSLIALSVKVLPISSVVSINPICCSPFRGDFDGDCFHGYIPQSIEARVELHELVAL
DRQLTNWLSGRNLLCLGQDSLTAAHLIKEDGFLLNKYQMQQLKMYCPYELPPPALVKAPR
LNSSVWTGKQLFSMLLPPGFNYYFSQNGVCIINGELTSSSDGSAWLRDNDGNLFQSLVKY
DKSMVLNFLYAAQEVLCDWLSDRGFSISLSDLYLSSDLHSRENLMDEISWGLLEAEQTCN
FKQLMVDSCRDLLAGNDEESQNVITFDVERLCYEKQGSAVLSQASVDAFKQVFRDIQTLA
FKYASKENSLLAMYKAGSKGSLPKLVQHSMCLGLQHSLVPLSFRFPHQLSCAAWNKQKRC
SDGFCTLFGECPIDDGPRQEDSFCISVTVVKKSKDSSVQLDTVRGLVMPFLLRAVIKGFP
EIKKVDILWKDRPKLSKSYDSRGELYLRVSMSEEHGTRTSWNALMDGCLPIMDMIDWARS
YPDNIHHFCSANGIDAGWKLFLNNLDSAISDVGKTILPEHLLLIANCLSATGEFVGLSSR
GLAQQRKHASVVSPFTQACFSNPSTCFVKAAKAGVTDDLQGSIDALAWGKPPCFGTGGQF
DIIYSWRDNELYQPVDVYDLLNSIVTPLKQNVKSDLPNSMNIKSDKYGDRSIYVHSGSIS
LGLKKLEGISRAYLRTVLTWKDIQKLYHASKKILNKYPIDHRLNEGEKKILMMALYFHPQ
SYEKIGTGAQYIKIGYHPEYKGTRCFHLVRTDGTTEDFSYRKCVLAALDSIAPEKAKLYR
SKWLEQQDYE
NT seq 3633 nt   +upstreamnt  +downstreamnt
atggacagtgacttgtgcggagagcaagaggtgccatctgccgtcctaacaggcataaat
ttcagtgtctcagtagataaagagaaagtatgtctagaaaaaatttgtgttgccagtgag
gtcactgatcctaagctggggctcccaaatccatcatctgagtgcttgacatgtggtgcc
aaagatttaaaacactgtgaaggccattttggagttattcaatttccgtacacaatactc
catccatattatctgtcggaagttgtacaaattctgaataaggtttgcccagcatgtaaa
tctcttcgggaagatctatggatcaagggacctgattccctatctatagatcaacctaaa
ggttgcaaatattgtgttgggaattcgttgaattggtatccaccaatgaaattcaaagtt
ttgtcggaagatatttttagactaagtgcgattatggtggaagtgaatgaaaacgttcta
agaaagtttcagaagcgacgaaaagaagcattgcctgccgactattgggactttcttcca
aaagattcgcatcaagaggaaagtggtacgagacctaatagaagaattttatctcatgcc
caggttcattttttattgaaagccattgatccgaagctcattagaaagtttatattgagg
ccagactccctttttctcaactatttccccgtgacgccaaatagtcatcgtgtaacagaa
ctgacatacatgttctccagtgggcagcgattgttctttgatgaaagaacgggggcttac
aaaaagctggttgacttcaggggaacttcaaatgagttgagttctcgtgtactgggttgt
ctaaaaatttccaagcttcacacattcaagtcctcaagtaaagatgcaacaactgctttg
ttaaagaatgaagattcttctaatatggttggtttgagatatatgaaagatgttcttctt
ggaaagagaaatgacagttcctttcgcacagttgttatcggggatcggagccttaaactt
agtgaaattggtattccctgtcatattgcagaaagtttgcaaatatcagagaacctgaat
aattggaactgggacaagttaatttcttcttgtgatctacgccttcttgagaagggtgag
attcatgtacgcagaaaaaatagtctgatttctttacgtcgtatcagtgatctgcggatg
ggagacattatctcccggccgctaaaggatggagatatcttgttgataaatagacctcca
tcaattcatccacactccctcattgctctttctgtcaaggtccttcctataagctcagtt
gtttccataaatcctatctgctgttctcctttccgtggagattttgatggtgactgcttt
catggctatattcctcaatcgattgaagctagagttgagcttcacgagcttgttgcctta
gataggcagttaactaattggttgagtggtagaaacctactttgtcttggtcaagatagt
ttgactgctgctcatttgataaaggaggatgggtttttattaaacaagtatcaaatgcag
cagctgaagatgtattgtccttatgagttgccaccgccagcacttgtgaaagctcctcga
ctgaatagttccgtttggactggcaaacaattattcagcatgctcttacctccaggcttt
aattattacttctcacaaaatggggtttgcattattaatggggagcttacatcttcttct
gacgggtctgcctggttacgtgacaatgatggaaatcttttccaaagtcttgttaaatat
gataaaagtatggttcttaactttttatatgctgcacaggaagttctttgtgattggttg
tctgataggggttttagcatttcactatcagacttgtatctttcttctgatctccattct
cgggaaaacttgatggatgagatttcttggggtttgctagaagcggagcagacatgtaat
ttcaaacagttgatggttgattcttgtcgagatcttcttgctggaaatgatgaagaaagt
caaaatgtcataacttttgatgtggagcgcttatgttatgagaagcaggggtcagctgta
ctcagccaggcttctgttgatgctttcaagcaagttttccgagatatccaaaccctggcc
ttcaaatatgcaagcaaggaaaattcattgctagctatgtataaggctggaagcaagggt
agtctgccaaaacttgttcagcatagcatgtgtcttggtttgcaacattcattggtcccc
ttatcattcagattcccacaccagctctcatgtgctgcatggaacaaacaaaagaggtgc
agtgatgggttttgcacccttttcggggagtgtcctatagatgatggcccacgtcaagaa
gattcattttgcatcagtgtcaccgtagttaagaagtccaaggattcttcagttcaattg
gatactgttcgaggcttggtgatgccatttctccttcgtgcagtgattaaaggattccca
gagataaaaaaggtggatattttgtggaaagatcgaccaaaactatcaaaatcttatgac
tctcgtggtgaactctacttgagggtttctatgtcagaggaacatggtactaggacatcc
tggaatgcacttatggatggttgtctcccgataatggatatgattgactgggcacgcagt
tatcctgacaacattcatcatttctgttctgctaatggaatagatgctggatggaaactt
tttcttaataatttggactctgcaatatctgatgttgggaagactatacttccagaacat
ctgcttcttattgcaaattgtctatcagctacaggagagtttgtcggcttgagttctaga
gggttagcacaacaaagaaagcatgcatctgtcgtctcacctttcacgcaagcatgcttt
tcgaatcctagtacttgctttgttaaagctgcgaaggctggagttactgatgatcttcag
ggaagtatagatgcattagcttgggggaagcctccttgttttgggacaggtggacagttt
gatatcatatattcttggagggacaatgagctttatcagccagtagatgtttatgacctg
ttgaatagcatagtcactcctttgaagcagaatgtaaagagtgacttacccaattctatg
aacatcaagtcagacaaatatggtgatcgatcaatctatgtgcacagtgggtctatttct
ttaggattaaagaaattagaaggcatatcaagagcatatttgagaactgtcttaacgtgg
aaagatattcaaaagctctatcatgcatcaaagaaaatactgaacaagtatcccattgat
caccgcttaaatgaaggggagaagaaaatcttgatgatggctttgtacttccatcctcaa
agttatgagaagattggaactggagcgcaatatataaagattggatatcatccagaatat
aagggtacccggtgctttcacttggttagaacagacgggacaaccgaagacttctcgtat
cgcaagtgtgtccttgctgctcttgatagcattgcccctgaaaaagcaaaactctacagg
tcaaaatggttggaacaacaggattatgaatga

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