Carica papaya (papaya): 110823352
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Entry
110823352 CDS
T05151
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC110823352
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cpap
Carica papaya (papaya)
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpap03036
]
110823352
03400 DNA repair and recombination proteins [BR:
cpap03400
]
110823352
Chromosome and associated proteins [BR:
cpap03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
110823352
DNA repair and recombination proteins [BR:
cpap03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
110823352
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
DUF483
Motif
Other DBs
NCBI-GeneID:
110823352
NCBI-ProteinID:
XP_021909413
LinkDB
All DBs
Position
Unknown
AA seq
1286 aa
AA seq
DB search
MVEILEPKMKSLDLYKLQCRLKDIYFPYIQCDEMCETGKTETPIEFQVNGVDLTEIEGGE
VAVTNLHSCNGDEFTFQLHFSLRKDHHTTSPGSKASQEANARLRCVYLPIVEGEECIERI
LESLEAQGCGIPENYESFSRVSVRRLGRLLPDARWALLPFMDFKQKKGDKALILKRCCMR
VKCFVETDAGFNPTPSKTDLAHHNLFTIALKNFGSKSFEKEKNSGSKSVEKEKDITIEVH
RSGRQINPSQLEKEYQNWILQMHDDHDEEINSGEDEPVLVISPLNKKELGISSDVVRVHR
IFKRKGLLWKYGQNIKVLKGACAGCWKNNVYATLEYFLIEGFQGDAGGEARIICRPLGVP
DESGCILEVNDGNARLDIRNSLSFPISIIDCGKCCAIEKNEWVDRLEKQKQKAPSMIDLL
NEKHCQELEFGGALSHDPVLAGQVPPSFVAVIRPGNFDSSGASKNLDQKFIIKSNFEMLL
EVKFRREVKSQDDQHIYSGRSAPSSLKGFHGLYIFSLGCRFPKLFENAGVYTFTFSIPES
GCETCVKHVLVKASSEVGEWKIINHEKNTSYSIQVGSSFPPCSIACYDIYGNRIHFTSTP
SVIAKLITTNGLCIEIDKVKVKLSYDKSIVKIENILIHSNELDRIRPSYAATLVIYQEDE
LVSVSIPCEIVPGSLRHVIVWSPTLRNNLLPGCVISHLMLEMFDEYGNHIIEGSEVELNV
DGFHIQGQIGRKHKVNDLGYVDLSGVLKVNVGYGKSASLIVLSDSKAIFKQEFQTETRKL
MVASGVPESCVAGSHLENVVFEIVDSNDEVDGTIHYDEECNGAHTLTIKSESFNKNQLFQ
YAFIHGRCTVPFLPLPKNEGTICFEVSHSRHAELHLTVKIRVETAKTAELEPATNVSWHE
YQSSCLYRKSLLLEDSSNGHAANVVSLMNNEKVLADGIEKYGLLIGKLENQLELLNGFKA
KVEHEKGVLQGLDNLDCLCTRDEIIKRIENKGGTAAALFCCLLRRDIFEEPHICLMKNLS
VHPIMYFLLLYXHFSQCRILAEYLGEDQLFAVVCRSSEAARELEYYNQDGEVNYNLGLHA
EAAALGKSINDRFLVICLEDVRAYTGEFIRDDPQEKLALPDPTLPTGEILPGFMGYAVNM
INIDAHHLKNTRTAANHGLRETLFYSLFGEVQVYETRKHMEVARAYINHGAVSLDGGILK
PNGFVSLGVRNSKIYFPVQIHESPESTKISRQIKEKNVDLEKVNLKIQEVTNYHKKATKK
FGKRKTKYLKLVGGIKPASVKSECES
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggtggagatattagagcctaaaatgaaaagcttggatctatataagctccaatgcaga
ctgaaggacatctactttccatatatccagtgcgacgaaatgtgcgagacagggaaaact
gaaacaccaattgagttccaggttaatggtgttgatttgactgaaattgaaggtggggag
gttgcagttaccaacttacattcttgcaatggagatgaatttacttttcagcttcacttt
tcccttagaaaagaccatcatacaacaagcccaggctctaaggcatctcaagaagcaaat
gctcgccttaggtgtgtttatcttcctattgttgagggggaagagtgtattgagaggatt
ttggaaagtctggaagctcaaggatgtggaattccagaaaactatgaaagcttcagtcgt
gtttcagttcgtcggcttggtcgtctacttccagatgctcgctgggcattacttccattt
atggacttcaagcagaagaagggagataaagctcttatattgaagagatgctgcatgaga
gttaaatgctttgttgaaacagatgctggttttaatccaactccttctaagacggatcta
gcacaccacaacctttttaccattgctttgaaaaattttggcagtaagtcatttgaaaaa
gagaagaactctggcagtaagtcagttgaaaaggagaaagatataacaatcgaagttcat
agatctggaagacaaataaacccttcacaactagaaaaagagtatcagaattggatcctt
cagatgcatgatgaccatgatgaggagatcaattctggtgaggatgaaccggttcttgtc
ataagccctctgaataagaaggagcttggcatttcatcagatgttgtaagggtgcatagg
attttcaagaggaaggggttattatggaaatatgggcaaaacataaaggttctgaaggga
gcttgcgctgggtgctggaagaataatgtctatgcaacattagaatattttttaattgaa
ggatttcagggagatgctggtggggaagctcgaattatatgcaggccactgggtgtgcca
gatgagagtggttgtatccttgaagtgaatgacgggaatgctcggttagatattcgtaat
tcgttatcctttccaattagtatcattgattgcggaaagtgttgtgccattgaaaaaaat
gagtgggtggatcgcctcgagaaacaaaagcagaaagccccatctatgattgatctgctg
aatgagaaacactgtcaagagttggaatttggtggggcgttatctcatgatccagttctt
gctggacaagttccaccaagttttgtggccgttatccgacctggtaattttgattcttcg
ggtgcttctaagaacttggatcaaaagtttattatcaagagcaactttgaaatgcttttg
gaagtcaaattcagaagagaagtcaagtctcaagatgatcaacatatttactcaggacgt
tcagcaccttcttctcttaaagggtttcatggtttatacatcttttcgctaggatgtagg
ttcccaaaattatttgagaatgctggtgtttatacatttactttctccattccagagtca
ggttgcgagacatgtgtaaaacatgttcttgttaaggcatcatctgaggttggagagtgg
aaaattataaatcatgaaaagaatacatcatattctatccaggttggttcatctttccca
ccttgctccattgcttgttatgacatctatgggaatcgaattcattttacttctacccca
tctgtgatcgccaaacttattacaacgaacggtttatgcattgagatagataaagtgaag
gttaagctttcatatgataaatcgattgttaagattgagaatatactaattcatagcaac
gagttagacaggatcagaccaagttatgctgcaacgttggtgatatatcaagaagatgag
ttggtttcagtttccattccatgtgaaattgtaccgggatctttgcggcatgtcattgta
tggtcaccaacattgaggaataacttgcttcctggttgtgtgattagccatttgatgttg
gagatgtttgatgaatatggtaatcatattatagaaggctccgaagttgaattgaatgtg
gatggatttcacatccaaggccagataggccgaaagcataaggtgaatgatcttggatat
gtagacctcagtggagttctgaaagtaaatgtgggttatggaaaaagtgcatcgcttatt
gttttgtctgatagtaaagcaattttcaagcaagagtttcaaactgaaacaagaaagctc
atggttgcatcaggggtacctgaatcctgcgttgcaggctctcacttagaaaatgtagtt
tttgaaattgttgactctaatgacgaagttgatggaactatccattacgatgaggaatgc
aatggagcccatactctaacaataaagtcggagtcatttaataagaatcagttgtttcaa
tatgcttttatacatggacgctgcactgttccgtttctccctctccctaagaatgaaggg
acaatttgctttgaagtttctcattctcgtcatgcagagctgcatcttactgtcaagatt
cgtgttgagacagctaaaactgcagaattagagcctgctacaaatgtgagctggcatgag
tatcaatcatcttgtttatatagaaaaagtttgctgctcgaagactcctcaaacggtcat
gcagctaatgtggtatcattgatgaataatgagaaggtgcttgcagatggaattgagaaa
tatggtttgcttattgggaaacttgaaaatcagctggaacttctaaatggttttaaggca
aaagtcgagcacgagaagggtgttttgcaaggtcttgataatctggactgcttgtgcaca
cgagatgaaatcatcaaaaggatcgagaacaagggtggcactgctgctgctcttttttgt
tgcttgttgagaagagacatatttgaagagccacatatttgtttaatgaagaatttatca
gtacatcctataatgtattttcttttattatattgacatttttctcaatgcagaatattg
gctgaatacttgggtgaagatcagctgtttgctgtggtgtgtagatcctctgaagctgca
cgtgagcttgagtattacaaccaagatggagaagttaattataatctcggtcttcatgct
gaagctgcagctcttggaaagtctataaatgaccgatttcttgttatatgccttgaggat
gtaagagcttatacaggggagtttataagggatgaccctcaagaaaagctagccttgcca
gatcctaccttaccaactggggaaattctaccaggtttcatggggtatgcagttaatatg
ataaacatagatgctcatcacttaaaaaatacaagaacggctgcaaaccatggtctcagg
gagaccctattctacagtctattcggtgaggttcaggtgtatgaaacgagaaagcatatg
gaagttgctcgtgcatatataaatcatggtgctgtatctttagatggtggaattttgaag
ccgaatggatttgtttcacttggagttcggaattctaaaatatattttccagttcagata
catgaatctcctgaaagtacaaagatctcgagacaaattaaggagaagaatgtagatttg
gaaaaagttaacctcaaaatacaggaagtaactaattatcataaaaaagctaccaagaaa
tttggcaagagaaaaacgaagtacctaaagcttgtgggtggtatcaaacctgcctctgtg
aaatcagaatgtgaatcttga
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