Carica papaya (papaya): 110826211
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Entry
110826211 CDS
T05151
Name
(RefSeq) ABC transporter I family member 20
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
cpap
Carica papaya (papaya)
Pathway
cpap03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpap00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110826211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpap03019
]
110826211
Messenger RNA biogenesis [BR:
cpap03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
110826211
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
nSTAND3
Arf
AAA_23
AAA_29
AAA_15
AAA_30
ORC-CDC6-like
AAA
AAA_22
UBD
AAA_28
Zeta_toxin
AAA_7
RsgA_GTPase
SRP54
Motif
Other DBs
NCBI-GeneID:
110826211
NCBI-ProteinID:
XP_021912504
LinkDB
All DBs
Position
Unknown
AA seq
322 aa
AA seq
DB search
MTSGEPTVQINGLRFTYPGIDGHPPQGSTPLIEDFSLILNSSERCLLVGSNGAGKTTILK
LLGGKHMVEPQMVRVLGRSAFHDTALASSGDLCYLGGEWRRDVAFAGFEVPIQMDVSAEK
MIFGVAGIDPLRRAELIKVLDIDLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVD
LDVLARADLLKFLRKECEERGATIIYATHIFDGLENWPTHIVYVAHGKLQLAMPMNKVKE
ISKVSLMRTVESWLRKEREEERRTRKERKEKFETHVEGSRVVGDPARAAVRALNNGWAAG
RLHATVAGEENFVLSSNRVLRQ
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgacgagtggagagccaacggtgcaaatcaacggactgagatttacctacccaggaatc
gacggccatccgccgcagggaagcactcctttaatcgaagatttctcccttatactaaat
tctagtgagaggtgcctacttgtcggttccaatggcgctgggaaaacaacgatcttgaaa
ctattgggaggaaaacacatggtggaaccacaaatggtgcgggtgctgggaagatctgct
tttcatgatacagctttagcgtcgtctggtgacctctgctatcttggaggagagtggagg
cgagatgttgcttttgcggggtttgaggttccgatacaaatggatgtttcagctgagaaa
atgatttttggagtagcaggtattgatcctttgagaagagcggagttaatcaaggtatta
gatattgatctttcatggaggatgcacaaggtctctgatggtcagagaaggcgtgttcaa
atttgtatgggtctcctgaaaccattcaaggttttgcttcttgatgagataacagttgat
cttgatgtgctagccagggctgaccttctgaaattcctaagaaaggaatgtgaagagcga
ggtgccaccatcatttatgcaacccatatatttgatggtctagaaaattggccaacacac
attgtttacgtggcacatgggaagctgcaattggcgatgccaatgaataaagttaaggaa
atcagcaaggtgtcattgatgagaactgtggagagctggcttaggaaagaaagagaagaa
gagaggagaacgcgaaaagagagaaaggaaaagtttgaaacacatgttgagggaagccgt
gtggtaggagatccagcccgtgctgctgttcgagcattgaataatggttgggctgcagga
agactgcatgccactgttgctggtgaagaaaactttgtccttagctcaaacagagttttg
aggcagtaa
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