Cupriavidus pauculus: EHF44_13125
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Entry
EHF44_13125 CDS
T05738
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpau
Cupriavidus pauculus
Pathway
cpau03030
DNA replication
cpau03410
Base excision repair
cpau03420
Nucleotide excision repair
cpau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EHF44_13125 (ligA)
03410 Base excision repair
EHF44_13125 (ligA)
03420 Nucleotide excision repair
EHF44_13125 (ligA)
03430 Mismatch repair
EHF44_13125 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpau03032
]
EHF44_13125 (ligA)
03400 DNA repair and recombination proteins [BR:
cpau03400
]
EHF44_13125 (ligA)
Enzymes [BR:
cpau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EHF44_13125 (ligA)
DNA replication proteins [BR:
cpau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EHF44_13125 (ligA)
DNA repair and recombination proteins [BR:
cpau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EHF44_13125 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EHF44_13125 (ligA)
MMR (mismatch excision repair)
DNA ligase
EHF44_13125 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EHF44_13125 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AZG14306
UniProt:
A0A3G8H1C6
LinkDB
All DBs
Position
1:2502012..2504153
Genome browser
AA seq
713 aa
AA seq
DB search
MTAKNEGARAPAPAPAGALPADASPAERVQWLRAELDRHSYQYYVLDAPTIPDADYDALF
SELQALETEHPDLLTDDSPTQRVGGAPLAAFDTVRHRVPMLSLNNGFEDEDVVNFDRRCA
QGLGRTAVAAPADDLFSAAEADDNGVEYSCELKFDGLAMSLRYEDGRLVQAATRGDGETG
EDVTANVRTIKAIPLKLRGKAPAVLEVRGEVFMYRADFDKLNARQAEAGEKTFVNPRNAA
AGSLRQLDPRITARRPLSFFAYGLGELEGAERPPTHAVMLDGFAALGLPVCDERRVVKGA
QGLLSFHRDIGARRDQLPYDIDGVVYKVNAIPEQEQLGFVSRAPRFALAHKFPAQEMTTT
VEDIEVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRRKDVHVGDTVIVRRAGDV
IPEVVAVVLERRPADARAFVMPTACPVCGSHVEKLEGEAVARCTGGLICAAQRKQALIHF
AQRRAMDIDGLGDKIVEQLVDMGVVRTPADLYKLGVAKLAALDRMADKSATNLVAAIDKS
RSTTLNRFIFALGIRHVGEATAKDLAKHFGKLDNLLAADEAALLEVNDVGPVVAQSIAGF
LAESHNVEVIEQLRAAGVHWPESEPTARAPLPLAGKTIVLTGTLPTLSREDAKEKLEAAG
AKVAGSVSKKTDYVVAGAEAGSKLEKAQALGVPVLDEDGMLKLLADAGEGEPQ
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccaagaacgaaggcgcgcgggctccggcccccgcgcccgccggcgcattgccg
gccgacgcctctcccgccgagcgcgtgcaatggctgcgcgccgaactcgatcggcatagc
taccagtactacgtgctcgatgcgccgaccatccccgacgccgactacgacgcgctgttc
agcgagctgcaggcgctggaaaccgagcatcccgacctgctgaccgacgactcgcccacc
cagcgcgtgggcggggcgccgctggccgcgttcgacacggtgcgccaccgcgtgccgatg
ctgtcgctgaacaacgggttcgaggacgaggacgtggtcaacttcgaccgccgctgcgcg
caggggctgggccggaccgccgtggccgcgccggccgacgacctgttcagcgccgccgag
gcggacgacaacggcgtggaatatagctgcgaactgaagttcgacggcctggcgatgtcg
ctgcgttacgaggacggccggctcgtgcaggccgccacgcgcggcgacggcgagaccggc
gaggacgtgaccgccaacgtgcggacgatcaaggccatcccgctgaagctgcgcggcaag
gcaccggccgtgctggaagtgcgcggcgaggtgttcatgtaccgcgccgatttcgacaag
ctcaacgcgcgccaggccgaggccggcgagaagaccttcgtcaacccgcgcaacgccgcc
gccggcagcctgcgccagctggacccgcgcatcacggccaggcggccgctgtcgttcttt
gcctacgggctgggcgagctggagggcgccgagcgcccgcccacgcacgcggtgatgctg
gacgggtttgccgcgctgggcctgcccgtctgcgacgagcgccgggtggtgaagggcgcc
caggggctgctgtcgttccatcgtgacatcggcgcccggcgcgaccagttgccgtacgac
atcgacggcgtggtgtacaaggtcaatgcgattcccgagcaggagcaactgggctttgtc
tcccgcgcgccgcgctttgcgctggcgcacaagttcccggcccaggagatgaccacgacg
gtcgaggacatcgaggtgcaggtcggccgcaccggcgcgatcaccccggtggcgcggctg
gcgcccgtgttcgtgggcggcgtgacggtgaccaacgccacgctgcacaacgaggacgag
atccgccgcaaggacgtgcacgtgggcgatacggtgatcgtgcggcgtgccggcgacgtc
atccccgaggtggtggccgtggtgctggaacgccgcccggccgacgcccgcgcgttcgtg
atgcctaccgcgtgcccggtgtgcgggtcgcacgtcgagaagctggaaggcgaggccgtg
gcgcgctgcacgggcgggctgatctgcgcggcgcagcgcaagcaggcgctgatccacttc
gcgcagcggcgcgcaatggacatcgacgggctgggcgacaagatcgtcgagcagctggtg
gacatgggcgtcgtccgcacgccggccgacctctacaagctcggcgtggccaagctggct
gcgctggaccgcatggccgacaagtcggcgacgaacctcgtggctgccatcgacaagtcg
cggtccaccacgctgaaccggttcatcttcgcgctgggcatccgccatgtcggcgaggcc
acggccaaggacctggccaagcacttcggcaagctcgacaacctgctggcggccgacgag
gccgcgctgctggaagtcaacgacgtggggccggtcgtggcccagtcgatcgcgggcttt
ctggccgaatcgcacaacgtcgaggtgatcgaacagcttcgcgcggcgggcgtacactgg
ccggaatcggagcccacggcccgcgcgccgctgccgctggccggcaagaccatcgtgctg
accggcacgctgccgacgctgtcgcgcgaggacgccaaggaaaagctggaggccgccggc
gccaaggtggcgggctccgtgtcgaagaagaccgactacgtggtggccggcgccgaggcg
ggcagcaagctggagaaggcccaggccctgggcgtgcccgtgctggacgaggacgggatg
ctgaagctgctggccgacgccggcgaaggagagccacaatga
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