Chlorobium phaeobacteroides BS1: Cphamn1_0463
Help
Entry
Cphamn1_0463 CDS
T00709
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpb
Chlorobium phaeobacteroides BS1
Pathway
cpb03030
DNA replication
cpb03410
Base excision repair
cpb03420
Nucleotide excision repair
cpb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cphamn1_0463
03410 Base excision repair
Cphamn1_0463
03420 Nucleotide excision repair
Cphamn1_0463
03430 Mismatch repair
Cphamn1_0463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpb03032
]
Cphamn1_0463
03400 DNA repair and recombination proteins [BR:
cpb03400
]
Cphamn1_0463
Enzymes [BR:
cpb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cphamn1_0463
DNA replication proteins [BR:
cpb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cphamn1_0463
DNA repair and recombination proteins [BR:
cpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cphamn1_0463
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cphamn1_0463
MMR (mismatch excision repair)
DNA ligase
Cphamn1_0463
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cphamn1_0463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
DNA_ligase_ZBD
BRCT
Nlig-Ia
PTCB-BRCT
Auto_anti-p27
HHH
Motif
Other DBs
NCBI-ProteinID:
ACE03427
UniProt:
B3EM49
LinkDB
All DBs
Position
485677..487731
Genome browser
AA seq
684 aa
AA seq
DB search
MDKKQAVAEIIRLREEIDRHNYRYYVLARPEISDFQYDAMLEKLVALEGEFPELKTSDSP
SQRVGGGITKEFPTVEHREPMLSLSNTYSIEEVGEFYHRVVKLLPEEHRDSPEFVAELKF
DGVAVSLLYRDGLLVRGATRGDGSQGDDITGNIRTIRSVPLRLGNPSGSGEGVERYEGRE
IEVRGEVFMTKTDFAVLNEGRPEEERFANPRNATAGTLKLQDSGEVSRRKMVFVAYYLKE
SSAEIISHAERLELLERLGFYTGGEHRVCRTLKDIREYIDGWQKKRLTGLPYEIDGIVLK
LNNTALRDELGATSKSPRWAIAYKFPAERARTVIRSIVFQVGRLGTITPVAELEPVRLAG
TTVSRSTLHNLEEVERLDVRLHDTVVIEKSGEIIPKVISVVEEKRRPGTLPVVVPESCPS
CGTPLVKPPNEVHYYCPNSEGCPAQTKARIEHFASRNAMDINGLGKAIVEQLVSSGMVVD
AGDLYRLTPDLIMRLDRQAEKSAGNLVNAIAKSRNREYFRVLFALGIRHVGIATARELAG
AYPTLDMLCKASVEALSDVTDVGPVIAESVHAFFRKPSATAMIEKLREAGVRLEAEKTKK
PVNLNFDGMKVIFTGALERYTRDEAAGLVRERGGKTVASVSKNTNLVVYGKEPGSKLEKA
RKLGVRVITESEFEEMLGEVGSNE
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggataaaaagcaggctgttgcagagatcataaggttgcgtgaggagatcgatcgtcac
aactaccgctactatgttcttgccaggccggagatttcagattttcagtacgacgccatg
cttgaaaagctggtcgcgctggaaggggagtttccggaactgaaaacctctgacagcccc
agccagcgggtgggcggcggcatcaccaaagagtttccgacggtcgagcaccgtgagccg
atgttgagcctttccaatacctactcgatcgaggaggtgggagagttttatcacagagta
gtgaaactgcttccggaagagcaccgtgacagccctgaatttgttgccgagctcaaattc
gacggtgttgcggtaagtcttctttatcgtgacggcctccttgttcgcggggcgacaagg
ggagacggctcgcagggggacgatatcacagggaatatccgcaccatcaggtcggttccc
ttgcgtcttggaaatccttcaggttccggagagggtgtggagcgctatgagggaagagag
atcgaggtacggggagaggtgttcatgacaaaaaccgattttgccgttctcaatgaagga
cgccctgaagaggaacggtttgcaaatccgaggaatgcaaccgccgggacattgaaactg
caggattcaggggaagtatcacgcaggaaaatggtttttgtcgcctactacctgaaagag
agttctgcagaaataatcagccatgccgaacgtcttgagctgcttgaacgtctgggtttt
tacaccggaggtgaacaccgtgtatgccggacgctgaaagatattcgcgaatatattgac
gggtggcagaagaagcgtctgactggactgccgtatgaaattgacggcattgttctcaag
ctgaacaatacggcgctccgggatgaacttggagccacctcgaaaagtcccaggtgggca
atagcgtacaagttccccgccgagagggcgcgtacggttatccgaagcattgtttttcag
gtcgggaggctcggcaccatcactccggtcgccgagcttgaacctgtccggcttgcagga
acgacggtttcccgctcgacgctgcataatcttgaagaggtggaacgtctcgatgtccgg
ctgcatgatacggtcgttatcgaaaagtccggcgagattattccgaaggttatcagcgtc
gtcgaggaaaaacgccggccgggcaccctgcccgttgttgttcccgagagctgtccttcc
tgcggaactcctctcgtcaaacctccaaacgaagtgcactattactgcccgaacagcgag
ggatgcccggctcagacgaaggcgcgcattgagcacttcgcgtcacgtaatgccatggat
atcaacggtctgggcaaggcgattgtcgagcagcttgtcagcagcggaatggttgtcgat
gcgggcgatctctatcgtctgactcccgatctgatcatgcgtctcgaccggcaggctgaa
aagtcggcaggcaacctggtcaatgctattgcaaagagcagaaaccgtgagtacttccgt
gttttgttcgcccttggtatacgtcatgtcggtatcgctacggcacgcgaacttgcaggg
gcctatcctacgcttgacatgctttgcaaagcatctgtcgaagcgctctcggatgttact
gatgtcgggcctgttattgctgaaagcgttcacgcgtttttcaggaagccgtccgcgacg
gcaatgatcgaaaaactcagagaggccggagtgcggctggaggctgaaaagacaaagaag
ccggtcaatctcaattttgacggtatgaaagtgatctttaccggggctctggagcggtat
acccgtgatgaagcggcagggcttgtacgtgaaagaggagggaaaacggttgcttcggtg
agtaaaaatacgaatctcgttgtttatggtaaagagccgggcagcaaactggaaaaggcg
cgaaaacttggtgtcagggtgattaccgaaagcgagtttgaagagatgctgggagaagtg
ggaagtaacgagtga
DBGET
integrated database retrieval system
