Clostridium perfringens 13: CPE2259
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Entry
CPE2259 CDS
T00074
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpe
Clostridium perfringens 13
Pathway
cpe03030
DNA replication
cpe03410
Base excision repair
cpe03420
Nucleotide excision repair
cpe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPE2259
03410 Base excision repair
CPE2259
03420 Nucleotide excision repair
CPE2259
03430 Mismatch repair
CPE2259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpe03032
]
CPE2259
03400 DNA repair and recombination proteins [BR:
cpe03400
]
CPE2259
Enzymes [BR:
cpe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CPE2259
DNA replication proteins [BR:
cpe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CPE2259
DNA repair and recombination proteins [BR:
cpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CPE2259
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPE2259
MMR (mismatch excision repair)
DNA ligase
CPE2259
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPE2259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_pol_lambd_f
HHH
5_3_exonuc
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
HHH_3
CARD
Motif
Other DBs
NCBI-ProteinID:
BAB81965
UniProt:
Q8XI62
LinkDB
All DBs
Position
complement(2594060..2596057)
Genome browser
AA seq
665 aa
AA seq
DB search
MSKMDKKKLIEELVEELNKYAYEYYVLGNSSVTDKDYDKKYYELVDLEKETGYKLPYSPT
QRVGDVILPEFKKYTHKARLWSLDKAQTLEEIREWHNRNVKFLEEYNRTSDEELPPLKYI
LTKKFDGLTINLSYDENGVLVTGATRGTGAIGEDVTAQVKTIKSIPLKIDCHDFLEIHGE
AIMTTEAFEKYNSEAETPLKNLRNGAAGALRNLNVAETAKRNLSAFFYDVGYKEGAPFKT
YMEMLNFIKTKGFPMDDYIRECTTLDEIQKEIDYIRDIRFDLNYDIDGLVIAIDDIRTRD
LLGYTVKFPKWAIAYKFEAQEATTKLLDVEWNVGRSGRVSPTAILEPVELAGVTVKRATL
NNMDDIARKGVRLGAEVFVRRSNDVIPEIMGVVPESLEGTKEIEEPKVCPACGAHLVHEG
VHIYCENTLGCKPQMVKTIVHFAGREAMNIAGFSEKTAEQLFEKLDIRDISDLYKLEYEK
LLDLDKFGPKKAQNLLDAIEKSKDCTLEAFLYSLGIPNVGVKTAKDLVKRFESLENLEKA
TFEELVSVQDVGDIVARSIIEFFKEERTLKVINELLSLGVNPHYEKKEVLESPFMGKTVV
VTGTLENYSRTSIKEKLESLGAKVSGSVSKKTDFVIAGEAAGSKYDKAKSLGVTILSEEE
FENMI
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgagtaagatggataagaaaaaattaatagaagagttagttgaagagttaaataaatat
gcttatgaatattatgttttaggaaattcttcagtaacagataaagattatgataaaaaa
tactatgaattagtagatttagaaaaggaaacaggatataaattaccctattcacctact
caaagagttggtgatgtaattcttcctgagtttaaaaaatacactcataaagctagactt
tggagtttagacaaagctcaaactttagaggaaattagagagtggcataatagaaatgtt
aaattccttgaagaatataatagaacttcagatgaagaattaccaccattaaaatatatt
ttaactaaaaagtttgatggattaacaattaatctttcctatgatgaaaatggagtatta
gttactggagcaactagaggaactggggctattggtgaagatgtgacagctcaggttaaa
actataaaatcaattccattaaaaattgattgtcatgattttctagaaattcatggagag
gctattatgactacagaagcctttgaaaaatacaatagtgaagcagagactcctcttaag
aatttaagaaatggagcagcgggagctttaagaaatttaaatgtagcagagacagctaaa
agaaatttatcagctttcttctatgatgttggatataaggaaggagctccttttaaaact
tatatggaaatgttaaatttcataaaaactaagggatttccaatggatgattatattagg
gaatgtacaactttagatgaaattcaaaaagaaattgattatataagagatataagattt
gatttaaattatgatatagatggattagttatagctatagatgatataagaactagagat
cttttaggatacacagttaaatttcctaagtgggctattgcatataaatttgaagcacag
gaggctacaactaagcttttagatgttgaatggaatgtaggtagaagcggaagagtatct
cccacagctatcttagagccagtagagttagctggagttactgttaagagggctacatta
aacaatatggatgatatagctagaaaaggagtaagattaggggctgaagtatttgtaaga
agaagcaatgatgttattccagaaataatgggagtagttcctgaaagcttagaaggtaca
aaggaaattgaagaaccaaaggtatgtccagcttgtggagcacatttagttcatgaagga
gttcatatctattgtgaaaacactttaggatgtaagcctcaaatggttaaaactatagtt
cactttgctggaagagaagctatgaatatagctggtttttcagaaaaaacagcggagcaa
ttatttgaaaagcttgatataagagatatatcagatctttataaattagaatatgaaaaa
ttattagatttagataagtttgggccaaagaaagcacaaaatcttttagatgccatagaa
aaaagtaaagattgtactctagaagcatttctatattccttaggaattcctaacgtagga
gttaaaactgctaaggatttagtaaagagatttgagtctttagaaaacctagagaaggct
acttttgaagaattagtatctgtccaagatgttggagatatagttgctagaagtataata
gaattctttaaagaggaaagaactttaaaagtaataaatgaattattatcccttggagta
aatcctcattacgagaaaaaagaagttttagaaagtccatttatgggaaaaacagtagta
gtaactggtactttagaaaactattctagaacatcaataaaagaaaaattagaatcttta
ggagcaaaggtttcaggaagtgtaagtaaaaagactgattttgtaatagcaggagaagca
gctggttcaaaatatgataaagctaaatctttaggtgttactatattaagtgaagaagaa
tttgaaaatatgatataa
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