Chaetura pelagica (chimney swift): 104387861
Help
Entry
104387861 CDS
T08631
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component isoform X1
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104387861 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpea03041
]
104387861 (EFTUD2)
Spliceosome [BR:
cpea03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
104387861 (EFTUD2)
Complex C
U5 SnRNP specific factors
104387861 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
104387861
NCBI-ProteinID:
XP_009994957
UniProt:
A0A093DHU9
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGRESKDLDELEDDEDDDDMGDHDEEHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLPGGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacctgtacgacgagtttgggaactacatcgggccggagctggactcggat
gatgacgatgatgagttgggacgagagtccaaggatctggatgagctggaggatgatgag
gatgatgatgacatgggggaccacgacgaggagcacccggggatggaggtggtgctccat
gaggacaagaagtactaccccactgctgaggaggtctatgggcctgaggtggagaccatc
gtgcaggaggaggacacacagcccctgacagagcccatcattaaacctgtgaaaaccaag
aagttctccctgatggagcagacacttccagtcactgtctacgagatggatttcctggca
gatctgatggacaactcggagctcattcggaatgtgacgctgtgtgggcacctgcaccac
ggcaagacttgctttgttgactgcctgatagaacagacacaccccgagatccggaagcgc
tacgaccaggatctctgctacactgatatcctgttcacagagcaagagaggggagtgggg
atcaagagcacaccagtgaccattgttctgccagacaccaaaggaaaatcttttctcttc
aacatcattgacactccaggtcacgtcaatttctccgacgaggtgacggccgggctgcgc
atctcggacggcgtcgtgctcttcatcgatgcggccgagggggtgatgctgaacacggag
cggctgatcaagcacgcggtgcaggagcgtctcgcggtcaccgtctgcatcaacaagatc
gaccggctgatcctggagcttaagctgcccccaacagatgcttattacaaactcagacat
attgtagatgaagttaatggtctgatcagcatgtattccactgatgagaacctggtgctg
tctccccttctggggaacgtgtgtttctccagctcccagtacagcatctgcttcaccctg
ggatcttttgcaaagatttatgcagacacatatggagacatcaattaccaggagtttgcc
aagaggctttggggtgacatctacttcaacccaaagacccgcaagttcactaaaaaggcc
ccgacgagcagttcccagcgcagttttgtggagttcattctggagcccctctacaagatc
ttggctcaggtggttggggacgtggacacgaccctgcccaggactctggatgaacttggc
atccacctgaccaaagaggaactgaaattgaacatccggcccctcctgcgccttgtctgc
aagaagttctttggggagttcacaggctttgtggacatgtgtgtgcagcacatcccctcc
cccaaggtgggggccaagacgaagatcgaacacacctacaccgggggcgtcgactcggac
ctgggggaggccatgagtgaatgtgaccctgatgggcctcttatgtgtcacacaacaaaa
atgtacagcacagatgatggtgttcagttccatgcctttggcagggtgctcagtgggacc
atccatgctgggcagcctgtgaaggtccttggagaaaactataccctggaagatgaggag
gattcccagatctgcaccgtcgggcgcctctggatctcggttgcgaggtaccacatcgag
gtgaaccgggtccctgcgggcaactgggtcctgattgaaggggtggaccagcccatcgtg
aagacggcaactgtgacggagcctcggggcaatgaggaggctcaaatcttccggcctttg
aagttcaacaccacgtcggtcatcaagatcgctgtagagcctgtcaacccctccgagctc
cccaaaatgttggatgggctccgcaaggtcaacaagagttacccctcccttactaccaag
gtggaagaatctggggagcacgtgatcctggggacaggggagctgtacctggactgtgtc
atgcacgacctgcggaaaatgtattcagagattgacatcaaggtcgctgatccagttgtg
acattctgtgagaccgtggtggaaacatcctccctgaagtgctttgctgagacacccaac
aagaagaacaagatcacaatgattgctgagcctctggagaagggacttgctgaggacatt
gaaaatgaagtggtccagatcacgtggaacaggaagaagctgggtgagttcttccagacc
aagtatgactgggatttgctggctgctcgttccatctgggcctttgggcctgatgccact
ggccccaacatcctggtggatgacacgctgccctccgaggtggacaagtccctgctgggc
tctgtgaaggacagcattgtgcagggatttcagtggggcaccagggaagggcctctctgt
gatgaattgattcgcaacgtcaagttcaagatcctggacgcggtgattgcgcaggagccg
ctgcccggggggggggggcagatcatccccaccgcccgcagggtggtctactctgccttc
ctgatggccaccccccgtttgatggagccctactacttcgtggaggttcaggctcctgcc
gactgcgtgtccgcggtgtacacggtgctggcccggcgcagaggccacgtgacacaggat
gcccccatcccaggctctcctctctataccatcaaagctttcatcccagccatcgattcc
ttcgggtttgagacagacctgaggacccacacgcagggacaagccttctccctctctgtc
ttccaccactggcagattgtgcctggtgaccccttggacaagagcattgtcatccggccc
ctggagccccaaccagccccacatctggcccgggagttcatgatcaagacccggcgcagg
aagggcctgagcgaggacgtgagcatcagcaagttctttgatgaccccatgttgctggag
ctggccaagcaagacgttgttctcaactaccccatgtga
DBGET
integrated database retrieval system
