Chaetura pelagica (chimney swift): 104388407 Help Entry 104388407         CDS       T08631                                  Symbol TRAF6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism cpea  Chaetura pelagica (chimney swift) Pathway cpea04010   MAPK signaling pathway cpea04120   Ubiquitin mediated proteolysis cpea04140   Autophagy - animal cpea04144   Endocytosis cpea04620   Toll-like receptor signaling pathway cpea04621   NOD-like receptor signaling pathway cpea04622   RIG-I-like receptor signaling pathway cpea05132   Salmonella infection cpea05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:cpea00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     104388407 (TRAF6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     104388407 (TRAF6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     104388407 (TRAF6)    04140 Autophagy - animal     104388407 (TRAF6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     104388407 (TRAF6)    04621 NOD-like receptor signaling pathway     104388407 (TRAF6)    04622 RIG-I-like receptor signaling pathway     104388407 (TRAF6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     104388407 (TRAF6)   09171 Infectious disease: bacterial    05132 Salmonella infection     104388407 (TRAF6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:cpea04131]     104388407 (TRAF6)    04121 Ubiquitin system [BR:cpea04121]     104388407 (TRAF6) Enzymes [BR:cpea01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      104388407 (TRAF6) Membrane trafficking [BR:cpea04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     104388407 (TRAF6) Ubiquitin system [BR:cpea04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     104388407 (TRAF6) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 Sina_ZnF zf-RING_5 SlyX PspA_IM30 Med21 RING_XB3-XBAT31 TRAF3_RING zf-RING_11 CEP104_ZnF U-box UPF0242 Spc29 DM DUF1664 HAP1_N PUMA_CC CENP-F_leu_zip ADIP HMMR_N DUF16 Motif Other DBs NCBI-GeneID:  104388407 NCBI-ProteinID:  XP_009995570 UniProt:  A0A093BHZ4 LinkDB All DBs Position Unknown AA seq 545 aa AA seqDB search MSLLHSDNSCGSRDVESGCCAAMASACAVGAKEDSVSISSGTGNAPSSFTEETQGYDVEF DPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFPD NFAKREILSLMVKCPNKGCSMKMELRHLEDHQLQCDFSTMECPQCQGAFQKNRLKEHMTQ ECSRRQVCCPNCATSMAYEDKELHDQTCPLANVFCEYCNTVLIREQMPNHYDNDCPTVPV PCFYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQSFQNISVTATNPVPFINGLSFEPAL FSHVSHAAYDCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNTHMAELKRTIRNL EGKITEMEAQQCNGIYIWKIENFSELQKAQEEERPVVMHSPGFYTGKPGYKLCLRLHIQL PNAQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKPELL AFQRPTIHRNPKGFGYVTFMHLQTLKQRTFIKDDTLLVRCEVLTRLDLNSLRREGFQARS TDGAL NT seq 1638 nt NT seq  +upstreamnt  +downstreamnt atgagcttgctacatagtgataacagttgtggatcccgagacgtggaaagtggctgctgt gcagccatggccagtgcctgcgctgttggagcgaaagaagacagtgtaagtattagcagt gggactggaaacgctccaagttctttcacagaagaaacacaaggatatgatgtggagttt gatccgcccttggaaagtaaatatgaatgtccaatctgtttgatggctcttcgagaagca gtgcagacaccatgtggacaccgtttctgcaaaggctgcattgtcaaatcaataagagat gcaggtcacaaatgtccagtagacaacgaaattcttcttgaaaatcaacttttccctgac aattttgccaaacgagaaatcctttcattaatggttaagtgtcccaacaagggctgcagt atgaagatggagctgagacatttagaggaccaccagttgcagtgtgatttttccaccatg gaatgtccacagtgtcaaggagccttccagaagaaccgtctgaaagagcacatgacacag gaatgttcgaggcgtcaagtctgttgtccaaactgtgccacatctatggcctatgaagat aaagagcttcatgaccaaacctgcccacttgccaatgtattttgtgaatactgcaacaca gtgcttatcagagagcagatgcctaaccattatgacaatgattgtcctactgtcccagtg ccatgtttttatagtgcctttgggtgtcccgaaaagatgcagaggaatgaacttgcacga cacatgcaggagttcactcaggttcacatgagaatgatggctcagagttttcagaatatc agtgttactgctacaaatcctgtacccttcattaatggcctatcctttgagcctgccctt ttctcacatgtgtcacatgctgcatatgactgtaatcctgaagttgaaaacttcaaagaa accattcagcagttggaaggtcgtcttgtaagacaagatcaccaaatcagagaactcatt gcgaaaatggaaactcagaacactcacatggcagaacttaaacgtactatccgaaatttg gagggaaagattactgaaatggaggcacaacaatgtaatggtatttatatctggaagatt gagaacttcagtgaacttcagaaagcccaggaagaagagagacctgttgtgatgcatagt cctggcttctatactggaaaacctggctacaagttgtgtttgcgtctgcatatccaatta ccaaatgctcagcgttgtgctaattttatctctctctttgtccacactatgcaaggagag tatgacagccatctgccttggcctttccaaggcactatacgactatctattttggatcaa tcagaaggcccagaaaggcagaatcatgaagaagtaatggaagccaagccagagttacta gccttccagagaccaacaattcaccgcaatccaaaaggttttggttatgtgactttcatg catctacaaaccttgaaacaaagaaccttcataaaggatgatacccttctggtgcgctgt gaagttctaacacgtctagatttaaacagtctccgcagagaaggatttcaagctcgtagt actgatggagctctgtag

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