Chaetura pelagica (chimney swift): 104388985
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Entry
104388985 CDS
T08631
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
104388985 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpea03400
]
104388985 (LIG4)
Enzymes [BR:
cpea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
104388985 (LIG4)
DNA repair and recombination proteins [BR:
cpea03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
104388985 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_IV
BRCT
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
SKA1
Motif
Other DBs
NCBI-GeneID:
104388985
NCBI-ProteinID:
XP_009996228
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASAPASQPSPKKTVASHVPFADLCSTLERIQMCKSRPEKTKYFKDFLDSWRKFHDALHR
KESNVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRTP
TGSRADTGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDAIANNNAAKNKGLLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAVELHNVTTDLEKVCRQLHDPAVSL
SDVSITLFSAFKPMLAAIADVQQIEKQMNNHIFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHTVFKSNIQNCILDGEMMAYNPETQTFMQKGNRFDIKRMV
EDSDLQTCFCVFDVLMVNNQKLGHEVLSRRYDILSSVFTPVTGRIHVVQKKSASSRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVSGLMDELDLLIVGGYWGKGS
RGGMMSHFLCAVAETPHPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYHRKDPP
CNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKTDCTLRFPRIEKIREDKEWYECMT
LDMLEDLRSKAEGKLASKHLHIDEYDEPQEKKRKTVSKVKKIIGIAEQFKAPDLSNVSKV
SSIFEDVEFCVVTGTSKHSKSELESRIAECGGSIVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQTKMLVPWQPAFMVHMSPDTKEHFAREYDCYGDSYTADADIAQLK
EVFSRIKDLQVMPLDMIAELEERYSWNSCQLSIFRGNTVYVDCYAVLNDPMTKIHGTTLS
IRALELRFYGAKVVPHLEEGISHVVTGEDNSRVKEMKTLRRTFGKKFKIVSELWVTESVE
EGVPKNENEYLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgcctcgcagccttctcccaaaaaaacggtggcttctcacgtgcct
tttgcagatctgtgttctacgctggagcgaatacagatgtgtaaatctcgtccagagaaa
accaaatatttcaaggatttcctggattcctggagaaaattccatgatgctcttcatcgc
aaagagtcaaatgtcactgattctttttatccagctatgaggcttattcttccacagttg
gaaagagaaaggatggcatatggaattaaagaaactatgcttgcgaagctgtatattgaa
ctgcttaatttgccaaaagatggaaaagatgctgcaaagcttttaaattacagaacacct
actggctcacgtgcagatacaggagattttgcaatgattgcatactttgtgttaaaacct
agaagcccaaaacaaggcagactgacaatagagcaagtcaatgaacacttagatgcaata
gctaataataatgctgctaaaaacaagggtctgttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggctcatccggatgatcataaaggatctaaag
cttggtgttagtcagcaaactatattttccatttttcatcctgatgctgttgaactgcac
aacgtcaccactgatttggaaaaagtttgcagacaactgcatgatcccgccgtctcactt
agcgatgtttctatcacgttgttttctgcctttaaaccaatgcttgctgccattgctgat
gtccagcaaattgagaaacaaatgaataaccatatattctacatagaaactaaactggat
ggtgaacgtatgcagatgcacaaagatggagatgtgtataaatatttttcccgaaatggg
tttgactatacacagcagtttggtgcttccccccttgatggttcattaacgccatttatt
catactgtatttaagagtaatatacaaaattgcattctcgatggtgaaatgatggcttac
aatcctgagacacaaacttttatgcaaaaagggaacagatttgacatcaaaagaatggtg
gaggactctgatctgcagacgtgcttctgcgtgtttgatgtgttgatggttaacaaccag
aagctgggtcacgaagtactaagcagaagatatgacatcttaagtagtgtatttactccg
gtgacaggcaggatacatgttgtacagaaaaaaagtgccagttcgagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaagggattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatacgtc
agtgggctgatggatgaactagaccttttaattgttggtggttactggggaaagggctca
cgtggtggaatgatgtctcatttcctttgtgctgttgcagagaccccccatccaaatgaa
aagcctactgttttccactccatttgtcgtgttggctctggctatactatgaaggaattg
tatgatttaggtttgaaactggctaaacactggaagccttatcataggaaggaccctccc
tgtaacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagattaaggcagctgagattgtgaacagtgatatgtacaaaactgactgtact
ttgagatttccccgaattgagaagataagggaagacaaagaatggtacgagtgcatgact
ttagacatgttagaagatctcagaagcaaagcagaagggaagctggcatctaagcacctt
catatagatgagtatgatgagccacaagagaaaaagaggaaaactgtatcaaaggtgaag
aagataattggaatagctgagcaatttaaagctcctgatctttctaatgtaagcaaggtt
tcaagtatatttgaagatgttgagttctgtgttgtgacaggaacatcaaaacactccaag
tctgaactggaaagcagaatagctgaatgtggtggcagcatcgtgcagaatccggggccg
gagacatactgcgtcattgtaggagctgagaatgtcagagtgaagaacatcattgcttcc
aacaaatatgatgtggtgagggcagagtggctccttcagtgttttcaaaccaaaatgctg
gtgccgtggcaaccagcctttatggttcacatgtctcctgacacaaaagaacattttgct
cgtgaatatgattgttatggagacagctacacagcagatgcagatattgcacaactcaag
gaagtgttctcaagaataaaagaccttcaagtgatgcctttggacatgattgcagagtta
gaagaacgctattcatggaacagttgtcagctcagtatattcagaggtaacactgtttat
gtggactgttacgctgttcttaatgaccccatgaccaaaatccatggaacaacactatca
attagagctttggagctccgtttttatggtgcaaaagtagtccctcaccttgaagagggt
atttcccatgttgttacaggagaagataattcccgagtaaaggagatgaaaacacttagg
agaacatttggtaaaaaatttaaaatagtttctgagctgtgggtaacagagtcagtggag
gaaggagtcccaaagaatgaaaatgagtacttgatttaa
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