Chaetura pelagica (chimney swift): 104392025
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Entry
104392025 CDS
T08631
Symbol
HSPG2
Name
(RefSeq) LOW QUALITY PROTEIN: basement membrane-specific heparan sulfate proteoglycan core protein
KO
K06255
basement membrane-specific heparan sulfate proteoglycan core protein
Organism
cpea
Chaetura pelagica (chimney swift)
Pathway
cpea03272
Virion - Hepatitis viruses
cpea04512
ECM-receptor interaction
cpea04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpea00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
104392025 (HSPG2)
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104392025 (HSPG2)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
104392025 (HSPG2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cpea04147
]
104392025 (HSPG2)
00535 Proteoglycans [BR:
cpea00535
]
104392025 (HSPG2)
Exosome [BR:
cpea04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
104392025 (HSPG2)
Proteoglycans [BR:
cpea00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
104392025 (HSPG2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ig_3
I-set
Ig_2
ig
V-set
Laminin_G_1
Laminin_G_2
Laminin_B
C2-set_2
Ig_6
EGF_laminin
EGF_LMN_ATRN
EGF
Laminin_G_3
DUF7630
Motif
Other DBs
NCBI-GeneID:
104392025
NCBI-ProteinID:
XP_009999683
LinkDB
All DBs
Position
Unknown
AA seq
2754 aa
AA seq
DB search
FGHCLNCQHNTEGPQCEKCKPGFFGDATKGTATSCHPCPCPYTEPSRRFSESCFLDTDGQ
ATCDACAPGYTGRRCERCAPGYEGDPVQPGGKCTPVGQELVKCDTRGGKDAVQLTAEDSS
PLGLANLAGTQSVGTGAHFSSPRELLFDTFSALPRDVYYWVLPAPFTGDKVTSYGGELRY
RVTHRAGAGAQALSPQPDVLLQGNGIFLEHFSGASVPSGVPTTITVPFRESAWRRADGRD
ATREHLLMALADVDLLMIRASYSGYTRSGTGLYLGTCEPCQCHGHTSECHPETGVCEGCR
DHTEGPQCDKCQPGYYGDATRGTPGDCQPCPCHGPHDESQXSCFEDRDGQPTCSACAPGH
SGRLCERCSPGYVGDPLRGEPCRVPGVPVGQCQCDPRGSMGEGCDASGQCRCKANVEGPR
CATCRPHHFHLNLPTQVGSYGGRLRYTLSYTPGGQGAPLPDADIQITGNDITLVAYQPEL
PPGTPNAPAGPRVPLAVRVHPPRTAVAQGSAVTLRCQATGDPPLYYHWAREDGRPLPEGA
QSRHQGEELHFPSIQPSEAGVYICSCRNLRHSNASRAEVIVTETPDKPITVTVEEKRVQR
VKPGTDVTFVCTAKSKSPAYTLVWTRQHHGSLPPGAVDFNGILTLRRVRPQDAGVYVCTG
SNMLDMDEGTATLYVQAPSKTQMFYGPVEFMEGHRPGSPPPALEWLGTLPPRAVVQGDTL
RFGAVEPGDEGHYECRARSSAGQHTARAFLHVQAPGAPRVQVSPERTEVTEGSTLRLYCR
VSGSPPATLTWEKQGGTLPPQARTEDGDIATLLLPAVTAADAGVYLCVGPSATGTARAAI
QVAVVAGSAPPVRIESSSPSVPEGQTLDLNCLVAGSGPATVTWYKRGGSLPAGHQVLGSR
LRVPHVTAADSGEYVCRVTSGTSVREASVIVTVVAAAGSSYGPPASGVPVRIEASSSTVA
EGQSVDLNCVVAGQGQATVTWYKRGGALPAKHQVSGSRLRLLQVXDSGEYVCGVTSGATT
RESAVMVTIQPSGAGAYPPGGTTPLRIESPSSAVTEGQTLDLNCVISSPAQATVTWYKRG
GSLPAKHQVSGSRLRLLQVTAADSGEYVCRVTSGATTRETSIMVTIQPSGAGAYPAGVTP
PVRIESSSSSVAEGQSLDLNCLVAGQGQATVTWYKRGGALPAKHQVSGTRLRIPQVTAAD
SGEYVCRVTSGGVTHETSLIVTIQTGSGSSYAVGVTPPVRIETSSAAVTEGQTLDLNCMV
AGQGHPHVTWYRRGGALPPNSQVSGTRLRLAQVSVADSGEYVCRVTLGTVTQEASVIVTV
PSGAGTYYSSGVTQPLRIESSSSAIAQGQTLDLNCLGQAPATVTWYKRGGSLSAGHQVSG
TRLRIPQVTAADSGEYVCRVTSGGVTQETSLIVTIDDGANPSHAGVTLPIRIESSASSVT
EGQTLDLDCLVAGQGQATITWYKRGGALPAKHQVSGSRLRLSQLSVADSGEYVCRADMGS
MSREATIVVTVTSRDSSSYRLQSPIISIDPHSMVVAPGEDATFKCRVHDGAQPINITWRM
GPGQHLQDNVKISTNGSVISISGAHVGNQGAYHCVASNRFGVASSVVNLLVQGAPTVSVM
PPGPVTVQEGKSLSVECLGRGEPRPLVRWSRPGSRQKLEHQTLLHMDSQAILQLSPAKPE
HAGPYVCTAHSALGSAQARVDISVEAAQRHPGAPEVIVPPAVTVVAGDTATLHCTARGEP
APRLEWSKLRAPLPWQHRVENGSLVIPRAALQDSGQYICNASSAAGTAQAFVTLHVETPP
YATSLPEESVVRAGDALQVQCLAHGTPPLLYSWDKVNGSLSARASHRASLLRISPALPDD
AGTYRCLVTNRVGTAETFAHVVVHGATVDRGDGGGGPLTVRVTPGSLVRGLGGTAEFTCT
ISGDPRARLEWLKEGGELPPAHSVQDGVLRLPQLAWGAQGVYVCRAIAPGGHAEDRATLT
IQALPKAVINIRTAVQTVLAGTEVELECLGLGEPRPHVTWSKVGGQIRPGVLVRAGTLTI
QRVERADAGQYRCTATNAVGTVQSHLILHVQAAPQISGQPEVKEVSLGSAAVLPCLASGF
PVPEITWSKLEGELPEGARVEGNILTLPAVSHEDAGVYVCAAANPRGRETAYYVLRVREH
LVPYFGQTPHSFLPLPTIKDAYKWFEILITFRPDAADGLLLYNGQRKNNGADFISFGLVG
GRPEFRFDAGSGMATIRHPTALRLGEYHTVRLRRNLTRGSLELDGHPPVNGTSQGKFQGL
DLDEKLYLGGYPDLSALAKTGLSRGFMGCVRQLRIQGEEVAFGDMDLQAHGVSSCPTCQD
RPCQNGGVCQDAESGTYICRCPHGFTGSNCEYSQALHCHPEACGPDATCVNRPDGQGYTC
RCHLGKSGERCTEGEWGRGDAVTVPSFEEVGAFVSYPPLTNVHHELRVEAEFLPRAPDGL
LLFSAGKAAPVEDYVALAMVGGHLEFRYELGSGMAVLRSAEPVALGRWHTVTAERVQKDG
TLVVDDAPPVTRSSPGKSQGLNLHSPLYLGGTEPPLRPPTNASFRGCIGEVTINGKRLEL
SEGFVRSRGLGQCGQRSPCGPGHVCALLVCASVCAWPHCEREENLCLHPSPCLHGGTCRD
NACICRDTHLACGGSVSLPGSPGGGTPSQSLSTPPKGPQCPFHRGDSWGYWFHRRNCRGN
PNCLVGIGEHVWLGEIDENTFHNIDDPNCERRKKVPPCPPEHPLPFQPPGEEGR
NT seq
8265 nt
NT seq
+upstream
nt +downstream
nt
tttgggcactgcctgaactgccagcacaacacggagggtccccagtgtgagaagtgcaaa
cccggcttcttcggcgatgccaccaagggcacggccacctcctgccacccgtgtccctgt
ccctacaccgagccatcccgcaggttttcggagtcgtgcttcctggacacggatggccag
gccacctgtgacgcctgcgcacccggttacactggacgacgctgcgagaggtgcgctcca
ggctatgagggagaccctgtccagccgggtggcaagtgcaccccagttggccaggagctt
gtcaagtgtgacacccgcgggggcaaggacgcggtccagctgacagctgaggactcctcc
cctctgggcttggccaacctggcgggcacccagtcggtgggcactggcgcccacttctcc
tccccgcgggagctgctcttcgacaccttctccgcgctgccccgtgacgtctactactgg
gtgctgcctgcgcccttcactggggacaaggtgacgtcgtacggcggggagctgcggtac
cgggtgacgcaccgggcaggggcgggtgcccaggccctgtccccccagcccgatgtgctg
ctgcagggcaatggcatctttctggagcacttcagcggggccagcgtccccagcggtgtc
cccaccaccatcactgtgcccttccgcgagagcgcctggcgccgggcagacgggcgcgac
gccacccgcgagcacctgctgatggccttggctgacgtcgacctgctcatgatccgggcg
tcctactcgggctacacgcgcagcggcaccgggctctacctggggacctgcgagccctgc
cagtgccacggccacaccagcgagtgccaccctgagactggcgtctgcgagggctgccgg
gaccacaccgagggtccccagtgtgacaagtgccaacctggctactacggcgatgccacc
cggggcaccccgggtgactgccagccctgtccctgccatggaccccacgatgagagccag
tagagctgcttcgaggacagggacgggcagcccacctgcagcgcctgcgccccagggcac
agcgggcgcctctgtgagaggtgttcgccaggatatgtgggggaccctctgcggggagag
ccctgccgagtgccaggtgtccctgttgggcagtgccagtgtgacccacgtggcagtatg
ggcgagggctgtgatgccagcgggcagtgccgctgcaaggccaacgtggagggtccccgc
tgtgccacctgccgtccccaccacttccaccttaatctccccacacaggtgggctcctac
ggtgggcgcctccgctacaccctgtcctacaccccgggggggcagggagcccccctgcct
gacgccgacatccagatcacgggcaacgacatcacgctggttgcctaccagcctgaactg
cccccggggacacccaatgcccccgcggggccccgggtgcccctggccgtccgtgtccac
ccaccacgcacggcggtggcacagggcagtgctgtcaccctgcggtgccaggccacggga
gacccccccctctattaccactgggcacgggaggacgggcgacccctccccgagggcgcc
cagagccgccaccaaggtgaggagctgcacttccccagcatccagccctccgaagccggt
gtctacatctgctcctgccgcaacctccggcacagcaacgccagccgcgctgaggtcatt
gtcaccgagacccctgacaagcccatcactgtcaccgtggaggagaaacgggtgcagcgg
gtgaaacctgggactgatgtcacctttgtctgcacggccaagagcaagtccccagcctac
acgctggtgtggacgcggcagcaccacgggtccctgccgcccggcgccgtcgacttcaac
gggatcctgaccctgcgccgcgtgcggccccaggacgccggcgtctacgtctgcactggc
tccaacatgttggacatggacgagggcaccgccacgctctacgtgcaggccccctcgaag
actcagatgttttatggccccgttgagttcatggaggggcacagaccaggtagccccccg
cccgccctcgagtggcttggcacgctgcccccacgggccgtggtgcagggggacacgctg
cggttcggggccgtcgagcccggggacgagggacactacgagtgccgggcgcgcagcagc
gctgggcagcacacagccagggccttcctccacgtgcaggcccctggtgccccacgggtg
caggtgagcccagagaggacagaggtgacagagggctccacgttgcggctctactgccgt
gtctcagggtcaccccctgctaccctcacctgggagaagcagggggggaccctaccaccc
caggcccgcacagaggacggtgacattgccacgctgctgctccccgctgtcaccgcggcc
gacgccggcgtctacctctgcgtgggccccagcgccaccggcacggcccgcgccgccatc
caggtggccgtggtggcagggtcagcgccacccgtgcgcatcgagtcctcgtccccgtct
gtccccgagggacagaccctggacctcaactgcctggtggcaggatcaggccctgccact
gtcacctggtacaagcgtggtggctccctgcccgccggccaccaggttttggggtcccgg
ctccgtgtcccccacgtcacagcggctgattcaggggagtacgtgtgccgggtgacatca
gggaccagtgtacgggaggcctctgtcattgtcaccgtcgtggctgcagctggatcatcc
tatgggccaccagcttcaggtgtccctgttcgcattgaggcatcctcatccaccgtggct
gagggacagagtgtggacctcaactgcgtggtagccgggcagggacaggccactgtcacc
tggtacaagcgtgggggggccctgcccgccaagcaccaggtgtccggctcccggctgcgc
ctgctgcaggttnccgactcgggcgagtacgtgtgcggggtgaccagcggggccaccacc
agggagtctgctgtcatggtgacaatccagcccagcggggccggcgcctaccccccgggt
ggcacaacccccctgcgcatcgagtccccgtcctctgctgtgactgagggacagaccctg
gacctcaactgtgtcatctccagccctgcacaggccactgtcacctggtacaagcgcggg
gggtccctgcctgccaagcaccaggtgtccggctcccggctgcgcctgctgcaggtgaca
gcggccgactcgggcgagtacgtgtgccgggtgaccagcggggccaccaccagggaaacc
tccatcatggtgacaatccagcccagcggggccggcgcctacccagctggtgtcaccccc
ccggtgcgcatcgagtcctcgtcctcctctgtggctgagggacagagcctggacctcaac
tgcctggtggccgggcagggacaggccactgtcacctggtacaagcgtgggggggccctg
cccgccaagcaccaggtatcgggcacccgcctacgcatcccccaggtgacagcagctgac
tcaggggagtacgtgtgccgggtgacatcgggcggtgtcacccatgagacatccctcatt
gtcaccatccagaccggcagtggctcctcttatgctgtcggtgtcaccccaccggtgagg
atcgagacctcctctgcagctgtcactgagggacagaccctggacctcaactgcatggtg
gcaggacagggccacccccatgtcacctggtaccggcgcgggggggctctgccccctaac
agccaggtatcaggcacccgcctgcgcctcgcccaggtgtcagtggctgattcaggggag
tacgtgtgtcgggtgaccctggggactgtcacacaggaggcttctgtcattgtcaccgtg
cccagtggtgctggcacctattactcctctggtgtcacccagcccctgcgcatcgagtcc
tcatcctcggccatcgcccagggacagaccctggacctcaactgcctgggtcaggcccct
gccactgtcacctggtacaagcgtggtggctccctgtctgccggccaccaggtgtcaggc
acccgcctgcgcatcccccaggtgacagcggctgattcgggggagtacgtgtgccgggtg
acatcaggtggtgtcacacaggagacgtccctcatcgtcaccatcgatgatggagccaac
ccatcccacgccggtgtcacgctgcccattcgcatcgagtcctcggcatcctctgtcacc
gagggacagaccctggacctggactgcctggtggccgggcagggacaggccaccatcacc
tggtacaagcgtgggggggcactcccagccaagcaccaggtttcagggtcccgcctgcgg
ctgtcacagctctcggtggccgactcaggggagtacgtgtgccgggcagacatgggcagc
atgtctcgtgaggccaccattgtcgtcactgtcacctcccgtgacagctctagctaccgt
ctgcagagccccatcatctccatcgacccgcacagcatggtggtggccccaggtgaagat
gccaccttcaagtgccgcgtccacgatggtgcccagcccatcaacatcacatggcggatg
ggacctggccaacacctccaagataatgtgaagatcagcaccaatggctcagtcatctcc
atctctggtgctcatgtgggcaaccagggtgcctaccactgcgtggcctccaaccgcttc
ggcgtcgccagcagcgttgtcaacctcctggtgcaaggagcacccacggtgtcagtgatg
ccaccaggccctgtgacagtgcaggagggcaagtccctcagcgtggagtgccttggccgg
ggcgaaccgcgcccgctggtgcgctggagccggccgggctcccggcagaagttggagcat
caaactctgctgcacatggacagccaggccatcctgcagctgtcaccagccaagccggag
cacgccgggccctacgtctgcacggcgcacagcgccctgggctcggcgcaggcgcgggtg
gacatcagcgtggaggcggcacagcggcaccccggcgcccccgaggtcatcgtgccacct
gctgtcaccgtggtggctggggacactgccacgctgcactgcacggccagaggtgagccg
gcaccacggctggagtggtcaaagctgcgggcaccgctgccctggcagcaccgggtggag
aacggcagcctggtgatcccgcgcgccgccctgcaggactcgggccagtacatctgcaac
gccagcagcgccgccggcaccgcccaggccttcgtcaccctccacgtggagacaccaccg
tacgccaccagcctgccggaggagagcgtggtgcgcgctggcgacgcgctgcaggtgcag
tgcctggctcatggcacccccccgctgctctactcctgggacaaggtcaatggcagcctc
tcggcacgcgccagccaccgcgccagcctcctgcgcatcagccccgcgctgcccgacgat
gccggcacctaccgctgcctcgtcaccaaccgcgtgggcaccgctgagacctttgcccat
gtggtggtccacggtgccaccgttgaccgtggggatggtggtggtggacccttgaccgtc
cgggtgacaccagggagcctggtcagggggctggggggcacagctgagttcacctgcacc
atctctggggacccccgggcgcgtctggagtggctgaaggagggtggggagctgccccct
gcccacagcgtgcaggacggggtgctgcggctgccccagctggcgtggggggcgcagggg
gtctatgtgtgccgggccatcgctccaggaggacacgcagaggacagggccaccctcacc
atccaggctctccccaaggctgtgatcaacatccggacagcggtgcagacggtgctggca
gggacagaggtggagctggagtgcctgggcttgggtgaaccccgtccccatgtcacctgg
agcaaagtgggtggtcagatccgtcccggggtgctggtccgtgctggaaccctcaccatc
cagcgggtggaacgggcggacgccgggcagtaccgctgcactgccaccaacgccgtgggc
accgtccagtcccacctcatcctccacgtgcaagccgccccccagatctcagggcagccg
gaggtgaaggaagtgtccttgggctccgccgccgttttaccctgcttggcatcgggcttc
cccgtgccagagatcacctggagcaagctggagggggagctgccagagggggcccgggtg
gaggggaacatcctgaccttgccggccgtgagccacgaggacgccggcgtctacgtctgc
gccgctgccaacccgcggggccgggaaaccgcctactatgtcctgagggtgcgagagcac
ctggtcccctacttcgggcagacgccccactccttcctgcccctgcccaccatcaaggat
gcctacaagtggtttgagatcctcatcaccttccgacctgatgctgctgatggccttctc
ctctacaacgggcagcgcaaaaacaacggcgccgacttcatctcctttggcttggtgggc
gggcgccccgaattccggtttgacgcgggctcgggcatggccaccatccggcaccccacg
gcgctgcgcttgggcgagtaccacacggtgcggctgcggcgcaacctcacccgggggtcc
ctggagctggacgggcaccccccggtcaatggcacctcccaggggaagttccaggggctg
gatctggatgagaagctctacctggggggttaccccgacctcagcgccctggccaagacg
gggctcagccgtgggttcatgggctgtgtacgccagctgcgcatccaaggggaggaggtg
gcctttggggacatggacctgcaggcgcacggtgtctccagctgtcccacctgccaggac
cgcccgtgccagaatggaggcgtgtgccaggacgccgagagtggcacctacatctgccgc
tgtccccacggcttcaccggcagcaactgcgagtactcacaggctctgcattgtcacccg
gaggcatgtgggcctgatgctacctgtgtcaaccggccggacgggcagggctacacctgc
cgctgccacctgggcaagtctggggagagatgcactgagggtgagtggggacgtggggac
gcggtgacggtgccgtccttcgaggaggtgggcgccttcgtctcctacccacccctcacc
aacgtccaccacgagctgcgggtggaggccgagttcctgccacgggcacccgacgggctc
ctcctcttcagcgccggcaaagccgcccccgtcgaggactacgtggccttggccatggtc
ggcggccacctcgagttccgctacgagctgggctcaggcatggccgtgctgcgcagcgcc
gagccggtggccctgggccgctggcacacggtgacagccgagcgggtgcagaaggacggg
accctggtggtggatgatgcccccccggtgacacgctcgtcacccggcaagagccaaggc
ctgaacctgcacagccccttgtacctggggggcactgagccccccctgcgccccccaacc
aacgcctccttccgcggctgcatcggagaggtgacgatcaacgggaagcggctggagctg
agcgagggcttcgtgcggagccgcgggctggggcagtgcgggcagcgctccccgtgcggg
cccgggcatgtgtgtgctctgctcgtgtgtgcatctgtgtgtgcatggccgcactgtgag
cgggaggagaacctctgcctgcaccccagcccctgcctgcacgggggcacctgccgggac
aacgcctgcatctgccgggacactcacctggcttgtgggggatctgtctccctgcctggc
tcccctggtggagggaccccctcccagtcactttccaccccccccaagggaccacagtgt
cccttccacaggggtgacagttgggggtactggttccacaggaggaactgccgggggaac
cccaactgcctggtgggcatcggggagcacgtctggctgggggagatagatgagaacacc
ttccacaacatcgacgaccccaactgcgagcgccgcaagaaggtacctccctgcccccct
gaacatcccctgcccttccagcccccgggggaggaggggaggtga
DBGET
integrated database retrieval system
