Chlamydia pecorum P787: CPE3_0594
Help
Entry
CPE3_0594 CDS
T02853
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpec
Chlamydia pecorum P787
Pathway
cpec03030
DNA replication
cpec03410
Base excision repair
cpec03420
Nucleotide excision repair
cpec03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPE3_0594 (ligA)
03410 Base excision repair
CPE3_0594 (ligA)
03420 Nucleotide excision repair
CPE3_0594 (ligA)
03430 Mismatch repair
CPE3_0594 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpec03032
]
CPE3_0594 (ligA)
03400 DNA repair and recombination proteins [BR:
cpec03400
]
CPE3_0594 (ligA)
Enzymes [BR:
cpec01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CPE3_0594 (ligA)
DNA replication proteins [BR:
cpec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CPE3_0594 (ligA)
DNA repair and recombination proteins [BR:
cpec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CPE3_0594 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPE3_0594 (ligA)
MMR (mismatch excision repair)
DNA ligase
CPE3_0594 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPE3_0594 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
HHH
RNA_pol_A_CTD
DNA_ligase_ZBD
BRCT_2
Nlig-Ia
HHH_8
Motif
Other DBs
NCBI-ProteinID:
AGW39926
LinkDB
All DBs
Position
complement(674438..676438)
Genome browser
AA seq
666 aa
AA seq
DB search
MCPGSEVSDSQEYYLELCQELEKHDYQYYVLHAPLISDYDYDMKMRELQLIEKQHPEWRV
PWSPTLRLGDRPSGELEIVDHKYPMLSIANGYSEEELEEFFSRVEKSLGHVPYYTIELKI
DGIAVAIRYEDRILVQAMSRGNGKQGEDITTNIRTIRALPLRLPEEAPEFLEVRGEVFFK
KAVFDEINAKQRALKKPEFANPRNAAGGTLKLLSAEKVAERKLEISIYSVLAEELSDSHC
DSLECCRQWGLSVQGMPRLCRSKEEVFVFLEEIKQLRSQLPMEIDGVVIKVDSIKDQQSL
GSTGKHYRWALAYKYAPEQAETVLEDILVQVGRTGVLTPVAKLRPVFLSGSLISRASLYN
EEEIRRKDIRIGDTVVLEKGGEVIPKVVGVVLGKRPEDSQSWQMPEHCPICHGDVVREGN
KVCVRCMNPTCSGGTIEKIRFFAGRSALDIEHLGEKVINKLFDMGLLHSCSDIFSLTKRD
LLQVPGFREKSVTNILKSIEKAKNVFLDRFLVALGIPYVGIGVASSLAEHFGSLERVISA
SEEELLEIEGIGDKVAVSIKEYFENPKHLEEIEKMLDFGVKVAPSHKSSSICQGKTFVIT
GAFAGITRSDIERTIRNCGGKVSSSVSKQTDYLVVGEDPGSKLKKAQELGIPLLDQDSLQ
KLLYNY
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgtgcccaggaagtgaagtgagtgattctcaagagtattacctagagctatgtcaagaa
ttagagaagcatgattatcagtattatgtgcttcatgcgcctctaatttcagattatgat
tacgacatgaaaatgagggagctgcagcttattgaaaagcagcatcctgagtggagagtc
ccttggtctccgactctacgtcttggagatcgtccttctggggagttagagatcgtagat
cataagtatcccatgctttccattgcaaatggctattctgaagaagaattggaggagttt
ttctccagagtggagaagagcttaggtcatgtcccttattatactatagaattgaaaatc
gatggcattgctgtagctatacgctatgaagatcgcattttagtgcaagcaatgagccgt
ggaaatggaaaacaaggggaggatattacgaccaatatccgaacaattcgagcattgccc
ttacgtcttccggaggaggcccctgagtttttagaggttcgtggtgaggtgttctttaaa
aaagctgtgtttgatgagattaatgcaaagcaaagggcattaaagaaaccagaatttgca
aatcctcgcaatgctgcaggggggaccttgaagttattatctgcagagaaagtggcagag
agaaaactagaaatttctatttattctgtgttggcagaggaattgagtgattctcattgc
gatagccttgagtgctgtcgtcaatggggactctctgttcaagggatgcctaggttatgt
cgctctaaggaagaggtttttgttttcttagaagagataaaacaattgcgatctcagttg
cctatggagattgacggggtagtcattaaggtcgatagtatcaaggatcaacagagttta
ggtagcactgggaagcattatcgttgggctttagcttataaatatgctccagaacaagca
gaaaccgttcttgaagatattttagtccaggtgggaagaacgggggttcttactcccgtg
gcgaagttgcggccggtctttctgtcgggatctttgatttctcgagcatccttgtataat
gaggaagagattcgaaggaaggatatccgcattggtgacactgtagtcttagaaaagggg
ggagaagttattcctaaagttgtgggcgtggttttagggaagcgcccagaagattctcaa
tcttggcagatgccagaacattgtcccatatgtcatggggatgttgttcgtgaagggaat
aaggtttgtgtgcgttgtatgaatcccacttgtagtgggggtactattgaaaagatccgc
ttttttgcggggcgttctgctctagatatagaacatttaggagaaaaagtaattaacaag
ctttttgatatgggcttgttacattcttgttcggacatattttcacttacaaaaagggat
ttgctgcaagtgcctggatttcgagagaagtctgttacgaatattttaaagagcatagaa
aaagcaaaaaacgtctttttggatcgttttcttgttgctttgggtatcccttatgttggg
ataggagtcgcatcttcattagcagaacattttggaagcttggagagggtcatttcagcc
tcagaggaggagcttctagaaatcgagggtattggagataaggtcgccgtttctattaaa
gagtatttcgaaaaccctaaacatttagaagaaatagagaaaatgttggattttggagtt
aaagttgcccccagccataagagcagctctatctgccagggaaaaacttttgtgattaca
ggagcttttgcggggataacacgctcggatattgaaagaactattcgaaattgtggaggt
aaggtttcttcgtctgtttctaaacagacagattatcttgttgtaggagaagatccaggc
tcaaaactcaaaaaagctcaagaactcgggattcccttgttagatcaagattctttacaa
aagcttctttataattattaa
DBGET
integrated database retrieval system
