Cucurbita pepo subsp. pepo (vegetable marrow): 111777227
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Entry
111777227 CDS
T05351
Name
(RefSeq) DNA repair protein RAD16 isoform X1
KO
K15083
DNA repair protein RAD16
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111777227
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
111777227
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
zf-RING_UBOX
zf-C3HC4
zf-RING_5
zf-C3HC4_2
ResIII
zf-C3HC4_4
zf-C3HC4_3
zf-RING_2
Prok-RING_4
FAD_binding_2
Motif
Other DBs
NCBI-GeneID:
111777227
NCBI-ProteinID:
XP_023512492
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Position
LG16:complement(5661605..5671117)
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AA seq
873 aa
AA seq
DB search
MKLRPRKPTSNILIQGNADGDASDDIDVSSLYSDSESEDPSSSSEDFCEPSTKKSRAKKK
RKGIKEEGPSIEQEVWRKVGNDENPHNQTPEVIPVQGVVDIGKPKTKYSRKKKQKPILLW
DVWAEEHERWIDENIEKDFDMASQNEVLTEAVETPSALTMPLLRYQKEWLAWALKQEDSP
VRGGILADEMGMGKTIQAIALVLAKRELPGAGLRRPSPYPSSSKDFPLIKATLVVCPVIA
VSQWVSEIDRFTLKGSNKVHVFHGPKRAQSLETLFEFDFVITTYSVVEAEYRKHLMPPKD
RCPYCSKLFYKKNLKIHLKYICGPDAVKTEKQAKQIRKRPIQPQISKGEVSAKDKNNNFH
NSGSQKSTFGQTMGQHENEENPCGKSILHSVIWDRVILDEAHFIKDRQSNTAKAVLAISS
SFRWALSGTPIQNRVGELYSLVRFLQIVPYSFYFCKDCDCRTLDHSSVSCPDCPHKRMRH
FCWWNKYITLRIQNVGRGPEFKRGMILLKHKILSSIVLRRTKKGRAADLALPPSIVSIRR
DTLDIQEEDFYESLYNDSRAKFNTFVAAGTATSNYAHIFDLLIRLRQAVNHPYLVVYSKT
NVISCGSIDGTDNNNEQACGICHEPAEEPVVTSCEHTFCKACIIGFANDFSKLVSCPSCS
KMLTIDFSTNLAGRDRTIKNTIKGFKCTSILNRIQLENFQTSTKIEALREEIRFMLERDG
SAKGIVFSQFTSFLDLINYSLTKSGITCVQLIGSMSLPQRDDAIKRFIDDPDCKIFLMSL
KAGGIALNLTVASHVFIMDPWWNPAVERQAQDRIHRIGQYKPIRITRFVIENSIEERILK
LQERKELVFEGTVGRSNDALGKLTLDDMRFLFI
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgaagcttcgtcctcgtaaaccgacctccaatattttgatccaaggaaacgcagatggt
gatgcttctgatgatatagacgtgtcgtctctttattctgacagtgaaagtgaagatcct
tcctcgagttctgaggacttttgcgagccttcaacaaagaagtctagagcaaagaaaaag
agaaaaggtattaaagaggaggggcctagcatcgagcaggaagtgtggagaaaagtaggt
aatgatgaaaacccacacaatcagacaccagaagttatccccgtccagggtgtggttgat
atagggaagccaaagaccaagtactcaagaaagaaaaagcaaaaacctatccttttgtgg
gatgtctgggcggaagaacatgagagatggatcgatgaaaacattgaaaaagattttgat
atggctagtcaaaatgaagtattgactgaagctgttgaaacaccctctgcacttacgatg
cccctactacggtatcagaaagagtggctagcttgggcactgaagcaggaagattctcca
gttagaggtgggatacttgcagatgaaatgggaatgggaaaaaccatccaagcaattgcc
ctggtacttgctaaacgtgaactacctggagctggactaaggagaccttccccataccca
agttcttccaaggacttccctttgatcaaagcaacacttgtggtatgtcccgtgattgct
gtaagccagtgggtaagtgagattgatcgtttcacattaaagggaagtaacaaggtgcac
gtgtttcatggtccaaaacgagcacagagtcttgagactttatttgaatttgattttgtt
attacaacatactctgtcgttgaggctgaatacaggaaacatttgatgcctcccaaggat
aggtgcccttactgtagtaaactattttataagaagaatttgaagattcacttgaagtac
atttgtggtcctgatgctgtcaaaacagagaagcaggctaagcaaataagaaaaaggcct
attcagccacaaatatcgaaaggggaagtatctgctaaagataagaacaacaattttcat
aatagtggcagccagaaaagcacttttggacagacaatggggcagcatgagaatgaggaa
aacccttgtgggaaatcaatattgcattctgtaatatgggaccgtgtcattttggatgag
gcgcatttcataaaagatagacagtctaatactgcaaaagctgttcttgcgatttcttct
tcatttagatgggctttaagtggcacacctatccagaatcgtgtaggggagctttactct
cttgttcgcttcctgcaaattgtgccttattctttctacttctgtaaggactgtgattgt
agaacactcgaccacagttctgttagctgtcctgactgccctcataaacgcatgcggcat
ttttgctggtggaacaagtatattacgctacggattcaaaatgttgggagaggtcctgag
tttaaaagaggtatgatattgctgaagcataaaattttaagtagcatcgtactacgacgc
accaaaaagggtagagctgctgatcttgctcttcctcctagtattgtttcaattaggcga
gatacccttgacattcaagaagaagatttttatgaatcattgtataatgatagtcgagca
aaatttaatacttttgtggcagcaggaacagcaacgagtaattatgcacacatatttgac
cttttgattcgcttgagacaggcagttaatcatccatatctcgttgtatattctaaaact
aatgtcataagttgtggaagcattgatggtactgataataataacgaacaagcatgtgga
atttgtcatgagccagctgaagaacctgtggttacctcttgcgagcacacattttgtaag
gcctgcattattggttttgccaatgatttttcgaagcttgtctcatgtccttcttgctca
aagatgctcaccattgactttagcacaaatctggctggtagagatcgaaccattaaaaat
acaatcaaggggtttaaatgtacaagtatacttaacagaatacaactggagaattttcag
acgagcacaaaaatagaagctttgagagaagaaatcaggttcatgttagaacgagatgga
tctgccaaaggaatcgtttttagccaattcacgtcatttttggatctaataaactattcc
ttaacaaagtctggtattacctgcgttcaactaattggaagcatgtccttgccacaaaga
gatgatgctattaagagattcattgacgatccagattgcaagatttttctaatgagctta
aaagctggagggattgctctcaatctcactgtggcatcgcatgtgttcatcatggaccct
tggtggaatcctgctgtggaacgacaagcacaagacagaatccaccgaattggacaatat
aagcctatcagaattacgagattcgttattgaaaactctattgaggagaggattttgaag
ctgcaagagaggaaagaactggtatttgaaggaactgtaggtcggtctaacgatgccttg
ggaaaattgaccttggacgacatgagatttctgtttatttga
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