Cucurbita pepo subsp. pepo (vegetable marrow): 111785068
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Entry
111785068 CDS
T05351
Name
(RefSeq) DNA ligase 4-like
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
111785068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cpep03400
]
111785068
Enzymes [BR:
cpep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
111785068
DNA repair and recombination proteins [BR:
cpep03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
111785068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
BRCT_2
DNA_ligase_A_N
DNA_ligase_A_C
BRCT
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Motif
Other DBs
NCBI-GeneID:
111785068
NCBI-ProteinID:
XP_023521312
LinkDB
All DBs
Position
Unknown
AA seq
990 aa
AA seq
DB search
MTPGGLLIKELNDLLDRLALTENRAEKTAVLSTLIQKTNAQEMKWIVMIILKDLKLGVSE
KSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRRQRHKRQDIEVGKAVRPQLASRVSNANAA
WKKLHGKEVVVECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYGHGMSDVIVQNVLATRCI
LDGEMLVWDKSLNRFAEFGSNQEIARAAKDGFDSNRQLCYVAFDVLYVGDTSVIHRSLKE
RHELLRGVVKPVKGQLEILVPNGGLNSDCAGDPSWSIRAYNVDDVERFFKSTIENRDEGI
VIKDLSSKWEPGDRSGKWLKLKPDYIHAGSDLDALIIGGYYGSGRRGGEVAQFLMGLAER
PPSNAYPRRFISFCRVGTGLTDEELDSVVNKLKPYFRKSEYPRKTAPSFYQVTNNSKERP
DVWIESPEKSIILSITSDIRTIKSEVFAAPYSLRFPRIQRVRYDKPWHECLDVQSFVELV
HSSNGTTQRGTNNSGWQDSKRKYINSTGKGRKKSVSVVPSHLLQTDISGIKGDSLIFSNM
LFYIVNVPPTHSLDSLHKLIVENGGTFSMNLNNSVTHSVAADSKGIKYEAAKRHGDVIHY
SWVLECCSQKKLLPLMPKHFLFLSGHSKKKLGEEIDEFSDSYFWDLELADLKQLLSNVSR
SEDVKAIDYYREKYCPKHEWCIFSGCQIYFHPLKPSLKSDWDALLELSVRRLKVEVSFRG
GKVSDDRVSATHIVVFFIPGPPVKYEAVLKSCNEADKHVMLKDKTHIVAHQWLEDCLERA
QRLQEDAYSLNPNTKKSIEKLNSGIGSETPSASENIDNQQIPSASKEYKDLGGNESASGQ
HMLSHSTKRSGGKKRGRPAASSMQKGKSSIEQVRRVLPRRTKGPAKINEVESDSSDHTNE
KTNAETGNIGTLCSESLGKNEFRMLENEKCVENKRGSPERNTQKGKAKVEQVRRTRARIA
KGDGSDYTDVKTNAEEAEMERGNVGTFCMY
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atgacccctggtggtctattaattaaagagttgaatgatttgctggaccgtttggcttta
accgaaaacagagcagagaaaaccgcagttctgtctactcttatacagaagacaaatgca
caggaaatgaaatggattgtcatgataatcctcaaagatctgaaactgggagtcagtgaa
aaaagcatttttcatgagtttcatccagatgcagaagacttattcaatgtcacttgtgac
ttaaaattggtttgtgaaaaactaagggatcgtagacaaaggcataagcgtcaggacatt
gaagttggtaaagctgtacgacctcagttggcttcaagagtgtccaatgcaaatgctgca
tggaaaaagcttcatgggaaggaagttgtagtcgaatgcaagtttgatggtgaccgtatt
caaattcataagaatggaactgaaatacactacttttcaaggaactttctcgatcactca
gaatatggacatggaatgtctgatgttattgttcaaaatgttcttgccactaggtgtata
cttgatggtgaaatgttggtgtgggataaatctttaaaccgttttgcagagtttggctca
aaccaggaaatagcgagggcagcaaaggatggatttgacagcaatcgtcagttatgctat
gtcgcgtttgatgttctttatgttggagatactagtgttattcacaggagtttgaaagaa
aggcacgagcttctcagaggtgttgtcaagcctgtgaagggtcaattggaaatcttagta
cctaatggtggtcttaatagtgactgtgctggggatccttcttggtcaatcagagcttat
aatgttgatgacgtggaaaggttctttaagagtaccattgaaaatagagatgaaggtatt
gttattaaggacctgagttctaaatgggaacctggtgatcggagtgggaagtggttaaaa
ttaaagcctgactacattcatgcaggatctgacttggatgccctcatcataggaggttac
tatggctctggacggcggggtggggaggtcgctcaatttttaatgggtcttgctgagcgt
ccaccctcaaatgcatatcccagacggtttatttccttctgcagagtaggaactggactt
actgatgaggagttagattctgttgtaaataaactgaagccttattttcggaaaagtgaa
tatccaaggaagactgcacccagcttttaccaagttacaaataattcaaaagaaagacca
gatgtttggattgaaagccctgagaagtcaatcatactttccattaccagtgatatacga
actataaaatctgaggtctttgcagcaccatatagcctaagatttccacgcatacaacgt
gttcgatatgacaaaccttggcatgaatgtcttgatgttcaatcttttgtagagcttgtt
cattcaagtaatggtaccacacaaaggggcacaaataatagtggctggcaagatagtaaa
cgaaagtacattaattccactggaaagggaaggaaaaagagtgtttctgttgttccttct
catttacttcagactgatatttcaggcattaaaggggactccttgattttctcgaatatg
ttattttacattgttaatgtgcctccaacccattctctcgattccttgcacaaattgata
gtggagaatgggggcacattctctatgaatttgaataattctgttacacactctgttgca
gctgatagcaaaggcatcaaatatgaggctgccaaacgtcatggagatgttatacattat
tcttgggtgttggaatgttgttcccagaagaaactactacctctaatgcccaagcatttt
ctctttctctctggtcactcaaagaaaaaattgggggaggaaattgatgaattttctgac
tcgtacttctgggatcttgaacttgcagacctgaaacagctgttaagcaacgttagtaga
tcagaagatgtgaaagctattgactactacagggaaaaatattgtccaaaacatgaatgg
tgtattttttctgggtgccaaatttactttcatcctttaaaaccatctttgaaatctgat
tgggatgccctgttggagctttcagtaaggaggttgaaggttgaagtttccttcagaggt
gggaaagtcagtgatgatcgtgtttctgctacccacattgtagtcttctttatacctgga
ccgcctgtaaaatatgaagcagtgttgaaaagttgcaatgaagcagataaacatgtcatg
ttgaaggataagactcatattgttgcacatcagtggttggaagactgtttggagagggcc
caaaggttgcaagaagatgcatatagcttgaatcccaatacgaaaaagtcgatcgaaaag
ttaaactctggaataggctctgagacaccatcggcctcagaaaatatagacaatcagcaa
attccttctgcttccaaggagtataaagatctgggaggaaatgaatctgcttcaggacaa
cacatgctctcacattcaactaagagatctggtggaaagaaaagaggaaggcctgctgca
agtagcatgcaaaaagggaaatcgagtatcgaacaagttcgaagagttttgccccgaaga
accaaggggcctgcaaaaataaatgaagttgaatcagacagcagtgaccatactaacgaa
aagacaaatgcagaaactggaaatattggaacactctgcagtgaaagcttaggaaagaac
gagtttcgaatgctggaaaacgagaaatgtgtcgagaataaaagaggaagtcctgaaagg
aacacacaaaaagggaaagcaaaggtggagcaagttcgaagaactcgggcacgtatagcc
aagggggacggcagtgactatactgatgtgaaaacgaatgcagaagaagctgaaatggag
agaggaaatgttggaacnttttgcatgtattag
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