Cucurbita pepo subsp. pepo (vegetable marrow): 111804820
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Entry
111804820 CDS
T05351
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
111804820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111804820
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
111804820
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GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
111804820
NCBI-ProteinID:
XP_023545385
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Position
LG11:8219884..8232699
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AA seq
960 aa
AA seq
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MGVPAFYRWLADRYPRSIADVVEEEPVDGPNGVVLPIDVSKRNPNGMEFDNLYLDMNGII
HPCFHPEGKPPPATYDDVFKSIFDYIDHLFSLVRPRKVLYMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLRKAFEADGQSLLPKEKPETCDSNVITPGTQFMAVLSVALQYYAH
SRLNHNPGWRFTKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEIHFSILREVIMLPGQQEKCFNCGKVGHFAAECRGKSDGPEDWNAADETPIHKKK
YQFLNIWVLREYLQYELDIPNPPFEVDFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAI
NLLMHIYRKEFPAMGGYLTDAGEVMLDKVEHFIQAVSVHEEQIFQKRARIQQAQENNEEM
RGRARRENGPAPPVPTIDKIKLGEPGYKERYYAEKFNANSENIAEIKQDVVSPFLVQTDP
YMILSQKILYFLFSIYSYIVLFSLSTVFIFMHHAYCLYVYSSTALPEKYRNLMTDHSSPI
LEFYPSDFEIDMNGKXSIHWIFFPCEIQGVAKLPFIDERKLLAQTRRLESSLTDEEKNRN
SVMLDLLYTHCAHPLSAQVFSYYQVASQLPPRERTCWVIDTNASGGMNGYLWLCERNVFR
NVFPSPISSLPDIQHNQVLNVTYLNPQKHEHVPRPPKGVIIPKKVLSSLDIKPFPTLWHE
DNNSRRYHGRERPQVPRAIAGPLLGEAAHRLVKNTLNIKPNGGSSSGLFDQPYSRNFPGQ
PIFSRPRQVGSSGFETGYGEDPNYSYGHYNNYQGASGRPRYPNSSNGMPGDNRQISRGND
RVQHQERYNNVRTGMSALTIEESMRNRSLDMLTPGLSPVMMPKMLNVGNSANQQNFAQAT
DALPSPPHKWINRAPTPTANIMYARQQESFTGGANEKQAKQMYLAKTPSFQSGSGSGSRQ
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtccctgccttctaccggtggcttgccgaccggtacccccggtcgatcgccgat
gtggtcgaggaagagccagttgatggccccaacggggtcgtcttgccgatcgacgtctcc
aagcgtaaccctaatggaatggagtttgacaacttgtatttggatatgaatggcataatt
catccgtgctttcatcctgaaggcaagcctccaccagctacatacgacgatgtatttaaa
tccattttcgattacattgaccatctcttctcattggttcggccaagaaaggttctttac
atggcaattgatggtgttgcacctagagctaaaatgaatcagcaacgttctcggcgtttc
agagctgcaaaagatgctgccgaggccgaagctgaagaagaaagattaagaaaagcgttt
gaagctgatgggcaaagcttattacctaaggagaagcccgaaacatgtgactctaatgtc
atcactcccggaactcaatttatggcagtgctctccgtagcacttcagtattacgcgcat
tcaagattaaatcacaacccagggtggaggtttacgaaggttattctatctgattcaaat
gttcctggcgagggagagcacaaaattatgtcatacattcggctacaacgcaatttgcct
ggttttgatccaaacactcgacattgtctgtacggtctggatgcagatctgattatgctt
agtctagcaacacacgagattcacttttcaattttaagagaggtaataatgctaccaggg
caacaggaaaaatgtttcaattgtggcaaagttggtcattttgcagctgagtgtcgtgga
aagtctgatggtccagaagattggaatgcagccgatgaaactccaattcataaaaagaaa
tatcagtttctcaacatttgggttttacgagaatacttgcagtatgaattggacattccc
aatccaccttttgaggttgattttgagcgaatagtggatgattttgtgtttttgtgtttc
tttgttggcaacgattttcttccacatatgccaaccttggagataagagagggtgctatt
aatttgctgatgcacatatatagaaaggagtttcctgctatgggtggttatcttactgac
gcgggtgaggttatgttagataaagtggagcattttatccaagctgtatctgtacacgaa
gaacaaatctttcaaaaaagagcccgaattcagcaggcacaagagaataatgaagaaatg
agaggtagagctagaagagagaatggtcctgcgcccccagttccaacaattgacaagatc
aagttaggggagcctggatacaaggagaggtattatgctgagaagttcaatgctaactca
gaaaacattgctgaaataaaacaagatgtggtaagtccattccttgtgcagactgatcct
tatatgattttgtctcaaaagattctctattttcttttcagcatatactcttatattgtc
ttgtttagcttatcaaccgtcttcatttttatgcatcatgcgtattgcttatatgtatac
agttcaaccgctcttcctgagaaatacagaaacttgatgaccgatcattcatcgccaatc
cttgaattttacccttcagattttgagattgacatgaatggaaagcngtctatccattgg
atctttttcccttgtgaaattcagggtgttgccaaattgcctttcattgacgagagaaag
ttgcttgctcaaactaggagacttgaaagctctttaacggatgaagagaagaatcggaat
agtgtgatgcttgatttgctttatacgcattgtgcccatccactgtctgcacaggttttc
tcttattaccaagttgctagtcaactacctccacgtgaaagaacttgttgggtgattgac
acgaatgccagtggtgggatgaatggatacctctggttgtgtgagagaaatgtattccgt
aatgtttttccatcaccaatcagtagtttgccagatatccagcataatcaagtcctgaat
gtaacctatcttaatcctcagaagcatgaacatgtccctagacctccaaagggtgtaatc
attcccaaaaaggttctaagttccttggatatcaaacctttccctaccttatggcatgaa
gacaataattcccggcgctatcatggcagagaacggcctcaagtacctagagctattgct
ggccctcttttgggagaagcagctcatcgtcttgtgaaaaacactcttaatatcaaacct
aatggtggctcgtcatcgggattatttgatcaaccctattctcgcaatttcccgggacag
cctatattctctcggccgcgacaagttggatcttcaggttttgaaacggggtatggtgaa
gatccaaattattcctacgggcactataataactaccagggtgcatcaggtaggccaaga
tatcccaactcttcaaatggtatgccaggtgacaacaggcaaatttcccgtggaaatgat
agagtacagcatcaggagcgatacaacaatgtgaggactggtatgtctgctttgacaatt
gaagagagcatgaggaatcgatctctcgacatgttaactcctggtctttctcccgtcatg
atgccaaagatgctgaacgtcggaaactcggcaaaccaacagaattttgcccaggctact
gacgctcttccttcaccaccacacaaatggatcaatagagcgccaacgccaactgcaaat
ataatgtatgcaagacaacaagaaagttttacaggaggagccaacgagaagcaagcgaaa
caaatgtatctagcaaagactccatcattccagagtgggtcaggatctggaagcaggcag
taa
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