Cucurbita pepo subsp. pepo (vegetable marrow): 111806813
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Entry
111806813 CDS
T05351
Name
(RefSeq) sm-like protein LSM3A
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
cpep03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111806813
09123 Folding, sorting and degradation
03018 RNA degradation
111806813
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111806813
03041 Spliceosome [BR:
cpep03041
]
111806813
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111806813
mRNA degradation factors
5'-3' decay
Lsm complex
111806813
Spliceosome [BR:
cpep03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111806813
Complex C
U2 snRNP components
111806813
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
Glutaredoxin
CATRA-C
Motif
Other DBs
NCBI-GeneID:
111806813
NCBI-ProteinID:
XP_023548062
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Position
LG01:complement(17890781..17892650)
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AA seq
97 aa
AA seq
DB search
MATEEESTVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE
IDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccgaggaagaaagcactgtcaaggagccgttggatctcattaggttgagtctt
gacgagcgcatttacgtcaagcttcgctctgaccgcgaactccgtgggaagctccatgcc
tatgatcagcatctaaatatgattcttggtgatgttgaagaaattgttaccacagttgaa
attgatgatgagacttatgaagagatagttcggacatccaggcgtacggtcccgtttctt
ttcgttagaggagatggtgtcatattggtttctcctccgctgaggactgtttaa
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