Cucurbita pepo subsp. pepo (vegetable marrow): 111807585
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Entry
111807585 CDS
T05351
Name
(RefSeq) ABC transporter I family member 19-like
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
cpep
Cucurbita pepo subsp. pepo (vegetable marrow)
Pathway
cpep03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cpep00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111807585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpep03019
]
111807585
Messenger RNA biogenesis [BR:
cpep03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111807585
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
nSTAND3
ORC-CDC6-like
AAA_29
AAA_23
SMC_N
AAA
AAA_28
NACHT
AAA_5
AAA_30
AAA_15
AAA_18
AAA_22
AAA_33
SRP54
AAA_16
Zeta_toxin
PduV-EutP
AAA_24
AAA_25
DUF7428
Arf
AAA_14
ATP-synt_ab
Motif
Other DBs
NCBI-GeneID:
111807585
NCBI-ProteinID:
XP_023549133
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Position
LG12:complement(9221213..9224771)
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AA seq
308 aa
AA seq
DB search
MADKEISFRGKEGCEDVDEKSSTGIKVQAMQFAYEIDSPLFVEFNLEIGSGSRCLLVGAN
GSGKTTLLKILAGKHMVGGRDVVRVLNSSAFHDTHLVCSGDLAYLGGSWSKTVSSAGEVA
LQGDFSAEHMIFGVEGTDPERRDRLIDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPFKV
LLLDEVTVDLDVVARMDLLDFLKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELRK
SEKLSEVDELKHCANLLSVVENWLRAETKLEKKKKKKNPILPPSNTQKNVSPFGSSPFSS
SRHMAYYR
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaaggagatttcgttccgcgggaaagagggttgtgaagatgtagatgagaag
agttctaccggcatcaaggtacaagcgatgcaatttgcttacgaaattgattcgcctctt
ttcgtggagtttaatctcgagattggctctggatctcgttgtcttctcgttggcgctaat
ggatctgggaagactactttgctgaaaattttggctggaaaacatatggttggaggaaga
gatgtggttcgggttctaaatagttcagcttttcatgacactcacctcgtatgtagtggt
gatttagcctacttgggaggatcttggagtaaaaccgttagctctgcaggcgaggttgca
ttacagggagacttttctgctgaacatatgatatttggagtcgaaggaacggatcctgaa
aggagagataggttgattgacctccttgatatagatctccagtggcgaatgcataaggta
tctgatgggcaacgtcgtcgggtgcaaatctgcatgggcctcttacatcctttcaaggtt
ctcttgctagatgaggtcacagttgaccttgatgtcgttgcgaggatggacctcctggac
ttcctaaaggaagagtgcgatcagagaggagctacaattgtatatgcaactcacatattt
gatggactggagacatgggcaactcatctggcatatattcaagatggcgagctaagaaag
tcagagaagctgtctgaagttgatgagttgaagcattgtgccaatttgctttctgtggtt
gaaaattggctgcgtgctgaaaccaaactcgagaagaagaagaagaagaagaacccaatt
ctccctccatccaacacgcagaagaacgtttctccttttggttcgtctcctttctcgtct
tccagacatatggcttattatcgctag
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