Chlorobium phaeobacteroides DSM 266: Cpha266_0475
Help
Entry
Cpha266_0475 CDS
T00439
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cph
Chlorobium phaeobacteroides DSM 266
Pathway
cph03030
DNA replication
cph03410
Base excision repair
cph03420
Nucleotide excision repair
cph03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cph00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cpha266_0475
03410 Base excision repair
Cpha266_0475
03420 Nucleotide excision repair
Cpha266_0475
03430 Mismatch repair
Cpha266_0475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cph03032
]
Cpha266_0475
03400 DNA repair and recombination proteins [BR:
cph03400
]
Cpha266_0475
Enzymes [BR:
cph01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cpha266_0475
DNA replication proteins [BR:
cph03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cpha266_0475
DNA repair and recombination proteins [BR:
cph03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cpha266_0475
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cpha266_0475
MMR (mismatch excision repair)
DNA ligase
Cpha266_0475
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cpha266_0475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
ABL64532
UniProt:
A1BDQ5
LinkDB
All DBs
Position
523801..525831
Genome browser
AA seq
676 aa
AA seq
DB search
MSDAVNVRKAIEELRREINRHNTLYYVDARPEISDYEFDRLMERLIELEKAFPDFVTPDS
PSHRVGGAITREFPSVRHREPMLSLSNTYSLAEVEDFYSRVKKLLLVEGVREQDMAAELK
FDGVAISLLYRDGLLVQGATRGDGTEGDDITTNLKTLSSVPLRIPLTSLPVIEGIERDIE
IRGEVFMQKDDFARLNEARPEEDRFANPRNATAGTLKLQDSGEVARRRLNFVAYYLRLSS
QDSFLLTQYDRLELLGQLGFFTGKHYRLCRDMKEIGDFIGYWAVERWNLPYETDGVVLKL
NDVALWPRIGATAKSPRWAIAYKYPAQQAKTVLQGVAFQVGRLGTVTPVAELEPVRLAGS
TVSRSTLHNFDEIERLGLMLHDRVIIEKSGEVIPKVIRVVLDERPENAEPVGVPSVCPEC
GASLEKPENEVSYYCPDQDSCPAQIRGRLLHFASRNALDIQSLGESLVAQLVQKGLVRDA
GDLYLLQQPQLEALERMGRKSAHNLLRALQESREKSYERLLYALGIRHVGQATARELARA
YETVEALQNASEEELATVPDVGPVVAHSVKDYFSKSSTQMLLRKLRDAGFPLRFTGPQKL
INRNFEGVNVLFTGALERYGRQQASELVQQRGGRVVGSVSRSTGVVVAGSEPGSKLDKAR
KLGVKVISEDEFNAML
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatgccgtcaatgtccgcaaggctatagaagaactacgcagggagatcaacagg
cacaatacgctctactatgttgatgcccgtcctgaaatttccgattacgagtttgatcgg
ttgatggaacgcctcatcgaactcgaaaaggcttttccggattttgtcacaccggacagc
ccttctcatcgggttggtggtgcaattaccagagagtttccttcggtacggcacagggag
ccgatgctgagcctttccaatacctactcgcttgcagaggtcgaggatttttacagtcgg
gtgaaaaaacttctgctggtggaaggggtgcgcgagcaggatatggcagccgaactgaag
tttgacggggtggccataagtctgctgtatcgcgatggtcttctcgttcagggtgcgaca
agaggtgacggtaccgagggggacgatattactacaaatctgaaaaccttgtcgagtgtg
ccgctcaggattcctctgacaagccttccggttattgagggcatagagcgcgatatcgag
atccgcggagaggtgttcatgcagaaggatgattttgcccgtcttaacgaggctcgtcct
gaagaagaccggtttgccaatcctcgtaatgcaactgccggaacgcttaaattgcaggat
tccggagaggttgcccgtcgacgtttgaattttgtggcttattatctgcggctttcgagc
caggactcttttctgcttacccagtatgaccggcttgaactgctcgggcagctcggtttc
tttaccgggaagcactacaggttatgtcgcgatatgaaggaaatcggtgattttatcggc
tattgggccgttgagaggtggaaccttccttatgaaacggacggagttgtcctgaaactc
aacgatgtcgcactatggccgagaattggcgcaaccgcaaaaagtcctcgctgggctatt
gcctacaagtatcccgcacagcaggcgaaaacagttctgcaaggggtggcatttcaggtc
ggcagactcggaacggtgactcctgttgctgaacttgagcctgttcggcttgccggttca
acggtgtcgcgttcaaccctgcataattttgacgagatagagcggcttggtctcatgctt
catgatcgggtgattattgaaaaatcaggggaggttatccccaaagtgattcgggttgtt
ctcgatgaacgacccgaaaatgcagagcctgtcggcgtgccttcggtttgtcccgagtgc
ggcgcttcgctcgaaaaacccgaaaacgaggtcagttactactgtcccgatcaagattcg
tgcccggcacagatcaggggacgcttgctccattttgcttcgcgaaatgcccttgacatt
cagtcgcttggtgaatcgctggtcgctcagcttgttcaaaagggtcttgtgagggatgcc
ggagatctttatcttcttcagcaaccgcagcttgaggctcttgagaggatgggacgaaaa
tcggcgcacaatctccttcgcgcacttcaagagagtcgggagaagagttatgaacgcttg
ctctatgcgcttgggattcgtcatgtcggtcaggctacggcccgtgaacttgccagggcc
tatgagacggttgaggccttgcagaatgcttcggaggaggagctcgcaacggtgcctgat
gtcgggccggttgttgcccatagcgtcaaggactatttttcaaaatcgtctacacagatg
ctgctccggaaactcagggatgccggctttcctttacgtttcaccgggcctcaaaagctg
atcaacaggaatttcgagggtgtgaatgttctgtttacgggagcgctcgaacggtatgga
cggcaacaggcatcggaacttgttcagcaacggggagggagggttgttggttcggtcagc
agaagcaccggagttgttgttgccggtagtgaacccggcagcaagcttgacaaagcgaga
aagctcggcgtaaaggtgatcagcgaggatgaatttaatgcaatgttgtaa
DBGET
integrated database retrieval system
