KEGG   Chitinophaga pinensis: Cpin_1066
Entry
Cpin_1066         CDS       T00959                                 
Name
(GenBank) DNA ligase, NAD-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
cpi  Chitinophaga pinensis
Pathway
cpi03030  DNA replication
cpi03410  Base excision repair
cpi03420  Nucleotide excision repair
cpi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cpi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Cpin_1066
   03410 Base excision repair
    Cpin_1066
   03420 Nucleotide excision repair
    Cpin_1066
   03430 Mismatch repair
    Cpin_1066
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cpi03032]
    Cpin_1066
   03400 DNA repair and recombination proteins [BR:cpi03400]
    Cpin_1066
Enzymes [BR:cpi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     Cpin_1066
DNA replication proteins [BR:cpi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     Cpin_1066
DNA repair and recombination proteins [BR:cpi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     Cpin_1066
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cpin_1066
   MMR (mismatch excision repair)
    DNA ligase
     Cpin_1066
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      Cpin_1066
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT HHH RNA_ligase
Other DBs
NCBI-ProteinID: ACU58564
UniProt: A0A979GR44
LinkDB
Position
complement(1272751..1274880)
AA seq 709 aa
MYTKEIEITLLQLAKDLLGKLQQKETIQDLDSTLENLRRVIIYNDWRYYVQSDPVLSDYE
YDQLFAWLKELETANPDKVSADSPTQRVALGISKNFPTVQHLVPMLSLENSYNADDLNDW
DRKAREISGLTDIEYCIEPKFDGASISLIYENDKLTRGATRGDGVSGEDITANIRQIRSI
PLSAHFAAHGIQSIEIRGEVLINKNTFKAYNDQRAADNLPPLANPRNAASGSLRMVDPRE
VAKRGLEAFLYHMSYHVMDDGKTEPQEIKTHSNTLQLLASLGFRSPAKEMKVVKGIQAVI
DYVLEFEKERDNLPYEIDGMVIKVNDYALQDKLGMTTHHPRWAMAYKFKARQATSKLRRV
EFQVGRTGSVTPVAKIDPVPIGGVTVGSISLFNEDVVKEKDLKIGDTVLVERAGDVIPYI
VKSLADLRDGTEEEIKFPTECPVCNEPLFKPEGESVWRCINLMCEAQVVERMIHFVSKDA
MDIRSLGESNVRKFYGLGLMKDIPGIYKIDFAQLEKLEGFGKKSLTNLQSAIEQSKTQPL
HRLIFGLGIRYVGETTAKTLANAVNHLLDLKDWTEEQLLALEDIGPKVAGSINQFFHLDD
SIHMLQELEALGLNLKSTKADHPGGGNLDGQTFLFTGTLNKLKRNDAEAMVEQQGGKILS
GVSSKLNFLIVGDDAGSKLEKAKKINTIRILSEDEFLNLIQSQAPVTES
NT seq 2130 nt   +upstreamnt  +downstreamnt
atgtatacgaaagaaatagaaatcactttgcttcaattagcaaaggacctgttaggaaaa
ttgcagcaaaaagaaactatccaggacctggatagtacgctggagaacctgcgccgggtt
attatttataatgactggcgttactatgtgcaaagtgaccccgttttaagtgattacgaa
tatgatcagttgtttgcctggttgaaagaactggaaaccgctaatcctgacaaagtcagc
gctgactcccccacgcagcgcgttgcactgggtatttcaaagaatttccccacagtacag
cacctggtaccgatgctgagtctggaaaactcctacaatgcagatgatcttaatgactgg
gaccgcaaggcacgtgagatcagcggactgacagacatcgagtattgtattgaacccaag
tttgacggcgccagtatttccctcatttatgagaatgataagctgacccgtggcgccacc
cgtggcgatggcgtatccggagaagatattaccgcaaatatcagacagatacgttctatt
ccgctgagtgcacacttcgcagcccatggtattcaatccatagagataagaggagaagtg
ttgatcaataagaatacgttcaaagcatataatgaccagcgtgcagctgataacctgcct
ccgctggccaatccgcgtaatgcggcttcaggttcactccggatggtagatccgcgtgaa
gtagccaaacgcggactggaagcattcctctaccacatgagctatcacgtgatggatgat
ggaaaaaccgaaccacaagagatcaaaacacacagcaataccctgcagctgcttgccagc
cttggcttccgctctcctgcaaaggaaatgaaagtggtaaaaggcatccaggcagtcatt
gattatgtactggaatttgaaaaggaaagagacaatctgccttatgaaatagatggtatg
gtgatcaaggtgaatgattatgccttgcaggacaaactgggtatgaccacacaccatccc
cgctgggcaatggcgtacaagttcaaagccagacaggcgaccagtaaattacgcagggtt
gaattccaggtaggacgtaccggttccgttacgcctgttgcgaaaatcgatcctgtacct
ataggcggtgttacggttggttccatttcattgttcaatgaagatgtcgtaaaagaaaag
gacctgaaaataggcgataccgtactggtagaaagagcgggcgacgtgattccttacatc
gtgaaatcacttgcagatctgcgcgatggtactgaggaagagattaaatttcctacggaa
tgtccggtgtgtaatgaaccactgttcaaaccagagggtgaaagcgtatggcgctgtatc
aacctgatgtgcgaggcacaggtagtggagagaatgattcatttcgtcagcaaagacgcg
atggatatccgtagtctgggtgagagcaacgttcgtaaattctatggcctgggactgatg
aaagatattccaggcatctataaaatagacttcgcccaactggaaaagctggaaggcttt
ggtaagaaatcgttgaccaacctgcaaagcgccatagagcagtcaaaaacgcaaccttta
catagactgatcttcggtctgggtattcgttatgtcggtgaaactacggccaagacactc
gcaaatgccgttaatcacctgctggatcttaaagactggacagaagagcagttactcgca
ctggaagatatcggaccaaaagtagccggtagtatcaaccagttcttccacctggatgac
agtattcatatgctgcaggaattagaagcgttggggctgaatctgaaaagcactaaagca
gatcatccaggcggcggtaatcttgacggacaaaccttcctttttaccggtacgctgaac
aagctgaaacgcaatgatgcagaagcgatggtagagcaacagggaggtaaaatattaagc
ggcgtaagcagcaaactgaacttcctgattgtaggtgatgatgccggcagtaaactggag
aaagcgaaaaaaatcaacacgatcaggatactgagtgaagatgaattcctgaacctgatt
caatcacaggcaccggttacggaatcataa

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