Chitinophaga pinensis: Cpin_1066
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Entry
Cpin_1066 CDS
T00959
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpi
Chitinophaga pinensis
Pathway
cpi03030
DNA replication
cpi03410
Base excision repair
cpi03420
Nucleotide excision repair
cpi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cpin_1066
03410 Base excision repair
Cpin_1066
03420 Nucleotide excision repair
Cpin_1066
03430 Mismatch repair
Cpin_1066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpi03032
]
Cpin_1066
03400 DNA repair and recombination proteins [BR:
cpi03400
]
Cpin_1066
Enzymes [BR:
cpi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cpin_1066
DNA replication proteins [BR:
cpi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cpin_1066
DNA repair and recombination proteins [BR:
cpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cpin_1066
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cpin_1066
MMR (mismatch excision repair)
DNA ligase
Cpin_1066
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cpin_1066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACU58564
UniProt:
A0A979GR44
LinkDB
All DBs
Position
complement(1272751..1274880)
Genome browser
AA seq
709 aa
AA seq
DB search
MYTKEIEITLLQLAKDLLGKLQQKETIQDLDSTLENLRRVIIYNDWRYYVQSDPVLSDYE
YDQLFAWLKELETANPDKVSADSPTQRVALGISKNFPTVQHLVPMLSLENSYNADDLNDW
DRKAREISGLTDIEYCIEPKFDGASISLIYENDKLTRGATRGDGVSGEDITANIRQIRSI
PLSAHFAAHGIQSIEIRGEVLINKNTFKAYNDQRAADNLPPLANPRNAASGSLRMVDPRE
VAKRGLEAFLYHMSYHVMDDGKTEPQEIKTHSNTLQLLASLGFRSPAKEMKVVKGIQAVI
DYVLEFEKERDNLPYEIDGMVIKVNDYALQDKLGMTTHHPRWAMAYKFKARQATSKLRRV
EFQVGRTGSVTPVAKIDPVPIGGVTVGSISLFNEDVVKEKDLKIGDTVLVERAGDVIPYI
VKSLADLRDGTEEEIKFPTECPVCNEPLFKPEGESVWRCINLMCEAQVVERMIHFVSKDA
MDIRSLGESNVRKFYGLGLMKDIPGIYKIDFAQLEKLEGFGKKSLTNLQSAIEQSKTQPL
HRLIFGLGIRYVGETTAKTLANAVNHLLDLKDWTEEQLLALEDIGPKVAGSINQFFHLDD
SIHMLQELEALGLNLKSTKADHPGGGNLDGQTFLFTGTLNKLKRNDAEAMVEQQGGKILS
GVSSKLNFLIVGDDAGSKLEKAKKINTIRILSEDEFLNLIQSQAPVTES
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgtatacgaaagaaatagaaatcactttgcttcaattagcaaaggacctgttaggaaaa
ttgcagcaaaaagaaactatccaggacctggatagtacgctggagaacctgcgccgggtt
attatttataatgactggcgttactatgtgcaaagtgaccccgttttaagtgattacgaa
tatgatcagttgtttgcctggttgaaagaactggaaaccgctaatcctgacaaagtcagc
gctgactcccccacgcagcgcgttgcactgggtatttcaaagaatttccccacagtacag
cacctggtaccgatgctgagtctggaaaactcctacaatgcagatgatcttaatgactgg
gaccgcaaggcacgtgagatcagcggactgacagacatcgagtattgtattgaacccaag
tttgacggcgccagtatttccctcatttatgagaatgataagctgacccgtggcgccacc
cgtggcgatggcgtatccggagaagatattaccgcaaatatcagacagatacgttctatt
ccgctgagtgcacacttcgcagcccatggtattcaatccatagagataagaggagaagtg
ttgatcaataagaatacgttcaaagcatataatgaccagcgtgcagctgataacctgcct
ccgctggccaatccgcgtaatgcggcttcaggttcactccggatggtagatccgcgtgaa
gtagccaaacgcggactggaagcattcctctaccacatgagctatcacgtgatggatgat
ggaaaaaccgaaccacaagagatcaaaacacacagcaataccctgcagctgcttgccagc
cttggcttccgctctcctgcaaaggaaatgaaagtggtaaaaggcatccaggcagtcatt
gattatgtactggaatttgaaaaggaaagagacaatctgccttatgaaatagatggtatg
gtgatcaaggtgaatgattatgccttgcaggacaaactgggtatgaccacacaccatccc
cgctgggcaatggcgtacaagttcaaagccagacaggcgaccagtaaattacgcagggtt
gaattccaggtaggacgtaccggttccgttacgcctgttgcgaaaatcgatcctgtacct
ataggcggtgttacggttggttccatttcattgttcaatgaagatgtcgtaaaagaaaag
gacctgaaaataggcgataccgtactggtagaaagagcgggcgacgtgattccttacatc
gtgaaatcacttgcagatctgcgcgatggtactgaggaagagattaaatttcctacggaa
tgtccggtgtgtaatgaaccactgttcaaaccagagggtgaaagcgtatggcgctgtatc
aacctgatgtgcgaggcacaggtagtggagagaatgattcatttcgtcagcaaagacgcg
atggatatccgtagtctgggtgagagcaacgttcgtaaattctatggcctgggactgatg
aaagatattccaggcatctataaaatagacttcgcccaactggaaaagctggaaggcttt
ggtaagaaatcgttgaccaacctgcaaagcgccatagagcagtcaaaaacgcaaccttta
catagactgatcttcggtctgggtattcgttatgtcggtgaaactacggccaagacactc
gcaaatgccgttaatcacctgctggatcttaaagactggacagaagagcagttactcgca
ctggaagatatcggaccaaaagtagccggtagtatcaaccagttcttccacctggatgac
agtattcatatgctgcaggaattagaagcgttggggctgaatctgaaaagcactaaagca
gatcatccaggcggcggtaatcttgacggacaaaccttcctttttaccggtacgctgaac
aagctgaaacgcaatgatgcagaagcgatggtagagcaacagggaggtaaaatattaagc
ggcgtaagcagcaaactgaacttcctgattgtaggtgatgatgccggcagtaaactggag
aaagcgaaaaaaatcaacacgatcaggatactgagtgaagatgaattcctgaacctgatt
caatcacaggcaccggttacggaatcataa
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integrated database retrieval system