Chrysemys picta (western painted turtle): 101941440
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Entry
101941440 CDS
T04662
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cpic
Chrysemys picta (western painted turtle)
Brite
KEGG Orthology (KO) [BR:
cpic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpic03036
]
101941440 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
cpic03400
]
101941440 (SMCHD1)
Chromosome and associated proteins [BR:
cpic03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
101941440 (SMCHD1)
DNA repair and recombination proteins [BR:
cpic03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
101941440 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
101941440
NCBI-ProteinID:
XP_005310440
UniProt:
A0A8C3F178
LinkDB
All DBs
Position
Unknown
AA seq
1990 aa
AA seq
DB search
MAAVAGGSTRAPGPSLSGPHGSRDRTVFLFDRRREQGDPKEKVLSCDEETYRGFRSAVCQ
AFCISSEDNFVITTTNRKEVTDDNFSEIVQEGVTLYLLQSVDQTLLSATKERIDFLPHYD
TLIKSGMYEYYASEGQNPLPFAFAELIDNSLSATSRNTGIRSIQIKLLFDESQGKPAVAV
IDNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPPPVPRSLNSDISYFGVGGKQA
VFFIGQSARMISKPADSHDVHELFLSKEDFEKKEKNKEAIYSGYIRNRKPSDSAHITSDD
ERFLHNLIMEERDKKSFTAVVVTGVQPDHMQYLKNYFNLWTRQLAHIYHYYIHGPKGNET
NATMKEAGPFNNIDIEILMFEKGKVPRMVNLREIKDDMQTLYINSAADSFEFKSHVEGEG
IVEGIIRYHPFLYDKETYPDDPCFPSRLKDDDDDDDCFVVEKGARGKRPIFECFWNGRLI
PYTSVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKEKNTL
FTRVFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKEIITRTDLTSKRMQSPWATYS
AIEWDGKTYRTGQLVKTIKTLPIFYGSILKFFLYGDHDGDVYATGGEVQLALEPQALYDE
IKIIPISKLDRAMSEKVVKKYIEDEMARLPDRLSVTWPEGDELLPNEIKLAGTPIGALRI
EILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPVGNKEIISHISQHGGKWPYWFKKME
NIHKLGSYTLKLQVVLNESNADTYAGRPLPSKMFKFNIVEGKPEKFSVSLLDPPFRVGVP
FNIPLDLQDEFGHPTQLATDIEPILEASGLTLQYEEISKGTNCIIKGVTAKGHVNNYLGK
NFNLKVILPGLKEDSQILKIRLLPGPPRQLKVKPDSEILKIENGTSFPFQVEVLDEAGNI
TAQPKLIVHCKFVGAPNLPVYAVDCSNAGTNILTGPVLHVQNIKKDQMLKARIEIPSCKD
VPPVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEINWIAGDVMHNLIYQMYDEGERE
IIITSALAEKIKVNWTPRINREQMIQGLLPDVKVPTSVKDVRYCLITFHDDHVSLESAFT
VRPLPDEPKHIKCKLKGPNTLQMGEELQSEIDVMVTDQYGNQIQTLSASCINSLGVSGNG
LDKSNLKTTWQESTQTMAVKGIRFYPGPPGSKELCFAWREFSDFLRVNLTSGPPVKLHLM
DWPELGEPIAIINGRELQKPLIVQLCDQWENPSPEPNVKISLVKASNLKIIPSSQQHKTD
ENGRANLGVISIHAPRGEHTLQLKASYNRNTLDCPIIKFNVLPDPEKPVCLNVKYDKNAS
FAAGSTFPDFMVSVISEDSNIIKNINPGRISMKMWEGQSSGNRVPANVTTLGCSKVKDGK
DEGFFYFRDKMVPERVGTYSIQFAFAIDKTNILSSEQIIIEVVANDPVQLLPESLPATPV
VSNVRTVASRTLIKDLCLHIKDEYNNRTGNDLVGKIVAAIKSSSEEDTEIPVFQGKVKTI
EFPFNRGSAEIVNLVLAENSPGRDSTEYILEFEADLPALAKPLEPYRLSFMFYNDFKKQQ
RMATLTRERDELSKSIAVYRNMFDTTEQLITEMKYQVQEAETRQSHLKNELKKHQIDIPQ
TSILQYVDSFIKQKMLEQEGVKKSPRRACTLSNYPRDNQDILGKIAHLAQIEDDKAAKVI
SWHMASDMDCVVTLTTAAARRIFDETQGRQQVLPLDSVYKKTLPDWNRTLPHLRNGRNHF
RPIGNPVFARDLLTFPENVEHCQIVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLT
REGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTLSGQIDLLQQYRTAVVKLHS
VNQDLHLHLESLNTPEMQKRKQELAEQEKSLKLIEEKLGMTPSGKGTESLLPLEALDMSD
SPTPPKRMRR
NT seq
5973 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggtggcgggaggcagcacccgagctcccgggccgagcctgtcagggccgcac
ggcagcagggaccggaccgtgttcctgttcgaccggcgccgggagcagggggaccctaag
gagaaagtgctgagctgcgacgaggagacctaccgcggcttccgcagcgccgtgtgccag
gcattctgcatttcttctgaagataactttgttatcacaacaaccaatagaaaagaggtt
acagatgacaacttcagtgaaattgttcaagaaggggttactttgtatttgctacagtca
gttgatcagacactactttcagcaacaaaggaacgaattgacttcctaccacactatgac
acacttatcaaaagtggcatgtatgaatattatgctagtgaagggcaaaatcctttgcca
tttgcctttgctgagttgattgacaattctttgtcagctacttctcgaaatactggtatt
cgaagcatacagataaaattgttatttgatgagtctcaaggaaaaccagctgttgctgtg
attgataatggaagagggatgacttctaagcagcttaacaactgggctgtgtatagatta
tcaaaatttacaagacaaggtgactttgaaagtgatcattcaggatatgtacgccctcct
ccagtgcctcgcagcttaaatagtgacatctcatattttggtgttggaggcaaacaagct
gtgttcttcattgggcagtctgccagaatgataagcaaacctgcagattctcatgatgtc
catgaacttttcctttctaaagaggattttgaaaaaaaggagaaaaacaaagaagcaata
tacagtggatacattagaaacagaaagccatctgactctgcgcatatcaccagtgatgat
gaacgatttctacacaatctcataatggaagaaagggacaagaagagtttcactgcggtt
gtcgttacaggtgtacaaccagatcacatgcagtacttgaaaaactattttaatctttgg
acaaggcaattggcacatatctatcattactatatccatggaccaaaaggaaatgaaact
aatgctacaatgaaagaagctggacctttcaacaacattgatattgagattttgatgttt
gaaaaaggaaaggtacctaggatggtcaaccttagagagatcaaagatgacatgcagaca
ttatatataaattctgcggcagatagctttgagtttaagtcacatgttgaaggagaaggt
atagtggagggcatcatccgctaccatcctttcttatatgataaagaaacatatcctgat
gatccatgctttccatcacgattaaaagatgatgatgacgatgatgactgctttgtggta
gaaaaaggggccaggggaaaaaggcctatttttgaatgtttttggaatggaaggttaata
ccatacacaagtgtagaagactttgactggtgtgctcctcccaagaagagaggacttgca
ccaattgaatgctacaatcgaatttctggcgcattatttaccaatgataagtttcaggtc
agcacaaacaagcttactttcatggacctggaactgaagttaaaagaaaaaaacactctt
tttacaagggtcttcaatggacaggagcagcgaatgaaaattgacagagaatttgctttg
tggctcaaagactgccatgagaaatatgacaaacagataaaattcacactgtttaaagaa
ataattacacgtactgacttgacctccaaaagaatgcaaagtccttgggctacatattct
gcaatagagtgggatgggaaaacgtacagaactggacagttggtgaaaacaattaaaact
cttccaatattttatggaagtatcttgaaattttttctatatggagatcatgatggggat
gtgtatgctacaggaggagaggttcaacttgctctggaacctcaagcattgtatgatgaa
ataaaaattattccaatctcaaaacttgacagagcaatgtctgaaaaagttgttaaaaaa
tacattgaagatgaaatggcaagacttcctgatagattgtcagtaacatggcctgaagga
gatgagctgttaccaaatgagatcaagcttgctggtacaccaataggagcattaagaatt
gaaatattgaataagaaaggagaggcaatgcaaaaacttccaggtacaagccatggaggg
tcaaagaaactgcttgttgaactaaaggttattttgcactctcctgttgggaataaggaa
atcatttctcacattagtcaacatgggggtaaatggccttactggtttaaaaaaatggaa
aatattcacaaacttgggagctacacactgaaactgcaagtcgtgttgaatgaaagtaat
gcagacacttatgcaggaaggcctctaccatctaaaatgtttaaatttaatattgtcgag
gggaaaccagaaaaattttcagtgagtcttttggatcctccatttcgagttggagtacct
tttaatattcctttggacttgcaggatgaatttggtcatcccacacagctggcaactgat
attgagccaattcttgaagctagtggtttgactttacaatatgaagaaataagtaaagga
acaaactgcatcattaagggtgtcactgctaaaggccacgtaaacaattacctgggcaag
aatttcaatctgaaggttattcttcctggtttgaaagaagactcacagatcttgaaaata
agattactgcctgggcctcctcgtcaattgaaagtgaaacctgattctgaaattctaaag
attgaaaatgggacatctttcccctttcaggttgaagtgttggatgaagcaggaaatata
acagcacaaccaaaactgatagttcattgtaagtttgtaggtgctccaaatcttcctgtg
tatgccgtggattgcagtaatgctgggacaaatattttaactggaccagttttgcatgtg
cagaatataaagaaagaccagatgctcaaagcaaggattgaaatacctagttgtaaagat
gtgccaccagtggaaaagactattaaactgctccccagtagccatgttgcaagactgcag
atttttagtgtagaaggacaaaaggctattcaaatcaaacaccaggatgaaattaactgg
attgcaggcgatgtcatgcacaaccttatctatcaaatgtatgatgaaggagaaagagag
atcatcataacttcagctctagcagaaaaaattaaggttaactggacacccaggattaac
agagagcaaatgattcagggactactgcctgatgtcaaagtaccaacatctgtaaaagat
gtgcgttattgcctaattacattccatgatgaccatgtatctttggagagtgcatttaca
gtcagaccacttcctgatgaacctaaacatattaaatgcaaattaaaaggaccaaataca
ttacagatgggtgaagagctacaaagtgaaattgatgtgatggttacagaccagtatggg
aatcaaattcagaccctctcagcctcttgcataaattccttaggagtttctgggaatggg
ctggataaatcaaatttgaaaactacgtggcaggaaagtacacaaaccatggcagtcaaa
ggtattaggttttatccaggtcctcctggaagtaaagaattgtgttttgcttggcgtgaa
ttttctgattttctcagagtaaatttgacttcaggacctccagttaaactacaccttatg
gattggccagaattaggggagcctattgcaataattaatggcagagaactgcagaagcct
ctgatagttcagctctgtgatcagtgggaaaatccatctcctgaaccaaatgtcaaaatc
agtcttgtaaaggctagcaacttaaagatcattccttcaagccaacaacataaaacagat
gaaaatggtagggctaatctgggagtaattagtattcatgcacccaggggagagcatacg
ttacagcttaaagcctcatacaacaggaacacgttagattgccctataatcaagttcaat
gtcctgcctgaccctgagaaaccagtgtgtttgaatgttaagtatgacaaaaatgcttct
tttgcagcaggaagtaccttccctgattttatggttagtgtaatttctgaagatagcaac
attattaaaaatattaatccaggacggatttctatgaaaatgtgggaaggacagagcagt
ggaaacagagtaccagctaatgttacaactcttggctgtagtaaagtcaaggatggcaag
gatgagggcttcttttacttcagggataaaatggttccagagagagtgggaacttacagc
atccagtttgcttttgcgattgataagacaaatatactcagcagtgaacagattataatt
gaagtggtagctaatgatccagtgcagttactaccagaatctctaccagctactcctgtt
gtttctaatgttcgaacagttgccagccgaactctgataaaggatttatgcctccatata
aaggatgaatacaacaaccgtacaggaaatgatttggttggcaagatagtagctgcaatt
aagagttccagtgaagaagatacagagatcccagtctttcaggggaaagttaaaacaatt
gagtttccatttaacagaggatctgctgaaattgttaatctagtgctggcagaaaacagc
cctggaagagatagcactgaatatattcttgaatttgaggcagacttaccagctttggca
aaacctctggaaccatatcgtctatcatttatgttttacaatgattttaagaaacagcag
cggatggcaacgcttacaagagagagagacgaactatctaagtcaatagctgtatacaga
aatatgtttgataccactgagcagcttattactgaaatgaaatatcaggtccaggaagct
gaaacaagacagtctcacctgaagaatgaactgaaaaagcatcaaattgatattccacag
acaagcatattgcaatatgttgattctttcataaaacaaaagatgttggagcaggaagga
gtaaagaaatctccaagaagagcatgtaccctttcaaactatcccagagacaatcaggat
attttagggaagattgcacatttagcacagattgaggatgacaaagcagcgaaggtcatc
tcttggcatatggctagtgatatggactgtgtagtcaccctaactactgctgctgctcgt
cgtatctttgatgaaacccagggtcgacagcaagtcttgcctcttgattctgtttacaag
aagactctcccggattggaacaggactttacctcacttacgaaatggaagaaatcacttc
agacctattggaaaccctgtatttgccagagatttgttaacatttccagagaatgtagag
cattgtcagatagtgttcgggatgctcttaggtgacaccatcattattgacaatttggat
gctgccaatcattacagaaaggaggttgtaaaaatcacacattgcccaacattattgact
agggaaggagatagaattcgcagcaatggaaagtttggaggccttcaaaataaagctcct
ccaatggacaaactcagaggaatggtatttggagcaccgatgccaaaactttacagtacg
ctttctggacagatagatcttcttcagcaataccgtacagcagtggtcaaactgcatagt
gttaatcaggatcttcatttacacttagagtcccttaatactccagagatgcaaaagaga
aaacaggagcttgctgaacaagagaaaagtctcaagctaatagaggagaaactgggcatg
accccatcaggtaaaggcactgaatcattacttccgctagaagcacttgatatgtctgac
agtcccactcctccaaaaagaatgagaagataa
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integrated database retrieval system
