Culex pipiens pallens (northern house mosquito): 120415060
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Entry
120415060 CDS
T07310
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
cpii
Culex pipiens pallens (northern house mosquito)
Pathway
cpii03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpii00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
120415060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cpii03041
]
120415060
Spliceosome [BR:
cpii03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
120415060
Complex C
U5 SnRNP specific factors
120415060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
MMR_HSR1
Roc
EF-G_D2
Ras
Motif
Other DBs
NCBI-GeneID:
120415060
NCBI-ProteinID:
XP_039432381
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All DBs
Position
1:1673615..1680768
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AA seq
978 aa
AA seq
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MDSDLYDEFGNYIGPDLESDDDDDQSLYGAPDQQDDLDMDDMAEEEAEREEGGADAGGSS
RAIVLHEDKRYYPSALEVYGQDVETIVQEEDAQPLDKPLIEPVKRLKFQIKEQELPETSY
DMEFLADLMDTPTLIRNVALIGHLHHGKTTFVDCLVRQTHPQFQDMDERNLRYTDTLFTE
QERGVSIKATPITLVLPDVKSKSFLINVFDTPGHVNFSDEVTAAMRMCDGVVLFVDAAEG
VSLNTERLLKHAIQERLAITVCINKVDRLMLELKLPPQDAYFKLKHIVEEINGLLTLYGD
ANTKQVSPILGNVCFASSLYGICFTLKSFARLYADTYDGVSAGEFARRLWGDMYFHNKSR
KFTKKPPHSSAQRSFVEFILEPLYKLFAQVVGDVDTTLADTLAELNIRVTKEEMKCNIRP
LLRLICNRFIGDFCGFVDMCVEHIQSPLENAQSKIDHIYTGVKESGIYQDMLNCDQNAQL
MVHSSKMYPTEDCTFFQVLARIMSGTLHAGQEVRVLGENYSLVDEEDSRTLQVGRLWIYE
ARYKVELNRVPAGNWVLIEGIDQCIVKTSTITDVNMNEDVFIFRPLKFNTQSIIKIAVEP
VNPSELPKMLDGLRKVNKSYPLLSTRVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIK
VADPVVAFCESVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENESVCIGWNKKKL
GEFFQVNYDWDLLAARSIWAFGPDNTGPNILVDDTLPFEVDKTLLGAVKDSIVQGFQWGT
REGPLCEEPIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPYLFV
EVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQ
AFCLSVFHHWQIVPGDPLDKSIVIRPLEPQPATHLAREFMIKTRRRKGLSEDVSINKFFD
DPMLLELARQDVLLNYPI
NT seq
2937 nt
NT seq
+upstream
nt +downstream
nt
atggattcggatttgtacgacgagttcggcaactacatcgggccggatttggagagcgac
gacgatgacgaccagagcttgtacggcgcgccggaccagcaagatgacctggacatggac
gacatggcggaggaggaagccgagcgggaagagggaggggccgatgcgggagggagttcg
cgcgcgatcgtgctgcacgaggacaagcggtactacccgtcggcgctggaggtgtacggg
caggacgtggagacgatcgtgcaggaggaggacgcgcagccgctggacaagccgctgatc
gagccggtcaagcggttgaagttccagattaaggagcaggagttgccggagacgagctat
gatatggagtttttggcggatttgatggatacgccgacgttgatacggaatgtggcgttg
attgggcatttgcaccatgggaagacgacgttcgtggactgtttggtgcggcagacgcat
ccgcagtttcaggacatggacgagcggaatttgcggtacacggacacgctgtttacggag
caggagcggggggtgagcattaaggcgacgccgataacgctggtgctgccggacgtgaag
agcaagagctttttgatcaatgtgtttgatacgccggggcatgtgaacttttcggatgag
gtgacggcggccatgcggatgtgcgacggagtggtgctgtttgtggacgcggccgagggc
gtgtcgttgaatacggagcggttgttgaagcacgcgattcaggagcggttggcgattacg
gtgtgcattaataaggtggaccggttgatgctggagttgaagttgccgccgcaggacgcg
tactttaagctgaagcacattgtggaggagatcaatgggctgttgacgctgtacggggat
gcgaacacgaagcaagtgtcgccgattttggggaatgtttgcttcgcaagctcgctgtac
gggatctgcttcacgctgaagtcgtttgcccggttgtacgcggacacttacgacggggtg
agcgcgggggagtttgcgcggcggttgtggggggacatgtacttccacaataagagtagg
aagtttacgaagaaaccgccgcacagttcggcgcaacggagcttcgtggagtttattttg
gagccgctgtacaagctgtttgcgcaggtggtgggggatgtggacacgacgctggcggac
acgctggccgagctgaacatccgcgtaacgaaggaggagatgaagtgcaacataaggcca
cttttaaggttgatttgcaatcggttcattggggatttctgcgggtttgtggacatgtgc
gtggagcacattcagtcgccgctggagaacgcccagagcaagattgaccacatttacacg
ggcgtgaaggagagtggaatctaccaggacatgctgaactgtgaccagaacgcgcagctg
atggtgcacagctcgaagatgtacccgacggaggattgtacgttcttccaggtgttggcg
cggattatgagcgggacgttgcacgccggccaggaggttcgagtgctgggtgagaactat
tcgctggtggacgaggaggattcccggacgctgcaggtcggccggttgtggatctacgag
gcacggtacaaggtcgagttgaaccgcgtccccgccggcaattgggtcctcatcgaggga
atcgaccagtgcatcgtcaaaacctcgaccatcaccgacgtcaacatgaacgaggacgtg
ttcatcttccggccgctcaagttcaacacccagtccatcatcaagatcgccgtcgaaccg
gtcaacccgtcggaactgcccaagatgttggatgggctgcgcaaggtcaacaaatcgtac
ccgctgctgtcgactcgggtggaggaatcgggggagcacgtgattctcgggactggtgaa
ctctacctggactgcgtgatgcacgacctgcgtaagatgtactccgagatcgacattaaa
gtggccgatcccgtggtggccttttgcgagagtgtcgtcgagacgagttcgctcaagtgt
ttcgccgaaacgccgaataagaagaacaaaattacgatgattgcggaaccgctggagaag
ggtctggccgaggacatcgagaacgaatccgtctgcatcgggtggaacaagaagaagctc
ggcgagttcttccaggtcaactacgactgggatctgctggcggcgcgatcgatctgggcc
ttcggtccggacaacaccggcccaaacatcctcgtcgatgacacgctccccttcgaagtg
gacaaaaccctgctcggcgccgtcaaggactccatcgtgcaagggttccagtggggaact
cgcgaaggcccgctctgcgaggaacccatccgcaacgtcaagttcaaaatcctcgacgcc
gtcatcgcccaggaaccgctccatcgcggcggtggccaaatcatcccgacggcccgtcga
gtcgcctactccgccttcctcatggccacgccccgcctcatggaaccgtacctcttcgtc
gaagtgcaagcccccgccgattgcgtctcctcggtgtacaccgtgctcgcccggcgccgt
ggccacgtcacccaggacgctcccgtccccggttccccgctctacaccatcaaagcgttc
atccccgccatcgactcgttcggcttcgaaaccgacctgcggacgcacacccaaggccaa
gccttctgcctgtccgtctttcaccactggcagatcgtccccggcgaccccctggacaag
agcatcgtcatccgcccgctcgaaccccaaccagcgacccacctcgcccgcgagttcatg
ataaagacgcgacgccgcaagggactctccgaggacgtctccatcaacaagttcttcgac
gatcccatgttgctcgagctcgcccgccaggacgtcctgctcaactaccccatctaa
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