Campylobacter pinnipediorum: CPIN18020_1122
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Entry
CPIN18020_1122 CDS
T05033
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpin
Campylobacter pinnipediorum
Pathway
cpin03030
DNA replication
cpin03410
Base excision repair
cpin03420
Nucleotide excision repair
cpin03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CPIN18020_1122 (ligA)
03410 Base excision repair
CPIN18020_1122 (ligA)
03420 Nucleotide excision repair
CPIN18020_1122 (ligA)
03430 Mismatch repair
CPIN18020_1122 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpin03032
]
CPIN18020_1122 (ligA)
03400 DNA repair and recombination proteins [BR:
cpin03400
]
CPIN18020_1122 (ligA)
Enzymes [BR:
cpin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CPIN18020_1122 (ligA)
DNA replication proteins [BR:
cpin03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CPIN18020_1122 (ligA)
DNA repair and recombination proteins [BR:
cpin03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CPIN18020_1122 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CPIN18020_1122 (ligA)
MMR (mismatch excision repair)
DNA ligase
CPIN18020_1122 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CPIN18020_1122 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
PTCB-BRCT
HHH_2
DNA_ligase_ZBD
BRCT_2
Nlig-Ia
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AQW86316
LinkDB
All DBs
Position
complement(1105285..1107243)
Genome browser
AA seq
652 aa
AA seq
DB search
MVKISGQNDYEKSIEILNKWSKAYYTDDKPLASDEEYDELYHKVLEYEKQNPSKVSIFSP
TNKIGGEISDKFSKASHIKQMWSMEDIFSKDELIAWLKRGDKGRFSFVVEPKFDGASLNL
LYENGILVKAITRGDGLVGEDVTQNAKVIKSIPLSIDYKGKIEIRGEVVIKKSDFDALNE
QRAKNSEQLLSNPRNAAAGSLRQLDSKITASRRLLFVPWGVGEHELEFKKHSDIMDFIKK
LGFYFDDFFKIAYNVDEIYKCYEELLSLRDEKPILMDGMVVRVDELDGSNDLGYTVKFPK
FMVAFKFPAIQKTTKLIDVSFQVGRSGVVTPVGVLEEVVIDGARVKSATLHNFDEIQRLG
IMKNDYVSIIRSGDVIPKITGVYKDRRDGSELAIERPKYCPECGSHLLDEGVFVKCQNLE
CKARVINSIIYYASKKCLNIDGLGDAIVNLLFEKNLIKNITDIYHLKYEDLICLEGFKDK
KVKNLLNAIENSKNCDLSRFINGLGCEHIGEVAAKKIAFAFGDNWLNVSYEDVFLLDGFG
DEMSKSFIEFIEINKETIINLINIVNPKAVISEVKQSLITDKTFVITGTLSKSRDEIKDM
LESFGAKVLSSVSKKTDFVLAGADAGSKLEKALSLGVKVISEDELERMINES
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggtaaaaatatcaggtcaaaatgattatgaaaaatccattgaaattttaaacaaatgg
tctaaggcatactatacggatgataagccattagctagcgatgaagagtatgatgagctt
tatcacaaggtgcttgaatatgaaaaacaaaatccaagtaaggtttctatattttcacca
acaaacaaaataggtggagagataagcgataaatttagtaaagcaagccatataaaacaa
atgtggagcatggaagatatttttagcaaagatgagcttattgcttggctaaaaagaggg
gataagggtagatttagctttgtagttgagccaaaatttgatggagcaagtttaaatttg
ctttatgaaaatggaattttggttaaagctataacaagaggcgatgggcttgttggagaa
gatgtaacacaaaatgcaaaggttataaaaagtattcctttaagtattgattataaaggc
aagatagaaataagaggtgaggttgttataaaaaaatctgatttcgatgccttaaacgag
caaagagcaaaaaactcagaacagcttttatcaaatccaagaaatgctgctgctggaagt
ttaagacaacttgatagtaaaataactgctagcagaagacttttatttgtgccttgggga
gttggagaacatgagctagagtttaaaaaacatagcgatataatggactttataaaaaaa
cttggattttattttgatgatttttttaagattgcttataatgttgatgaaatttataag
tgttatgaagagcttttgagtttaagggatgaaaagcctattttaatggatggtatggtt
gttagagttgatgaacttgatggctcaaacgatcttggctataccgttaaatttccaaaa
tttatggttgcttttaaatttccagccatacaaaaaacaacaaaactcatagatgtatct
tttcaggttggaagaagtggtgttgttactcctgttggtgttttagaagaggttgttata
gatggcgctagggtaaaatcagcaacacttcataattttgatgaaatacaaagactcggt
attatgaaaaatgattatgttagtataatacgctcaggcgatgtaataccaaagataacg
ggtgtttataaagatagaagagatggctctgagcttgcgatagagcgtcctaagtattgt
cctgaatgcgggtctcatttgcttgatgaaggtgtttttgtaaagtgtcaaaacttagaa
tgcaaagcaagggttataaactcaattatatattatgcttcaaaaaaatgtctaaatata
gatggtcttggagatgcgatagtaaatttgctttttgaaaaaaatctcataaaaaatata
acagatatctatcatcttaaatatgaggatttaatctgtcttgaaggcttcaaagataag
aaggtaaaaaatttactaaatgctattgaaaatagtaaaaattgtgatttgtcaagattt
ataaatgggctagggtgcgagcatataggcgaagtggctgctaaaaagatagcttttgct
tttggtgataattggttaaatgttagctatgaagatgtttttttacttgatggttttggt
gatgaaatgagtaaaagttttattgaatttattgaaattaataaagaaacaataataaat
ttaataaacatagtaaacccaaaagctgtaattagtgaagtgaagcaaagtttgattaca
gataaaacttttgttataactggcacacttagtaaatcaagagatgagataaaagatatg
ttggaaagtttcggtgcaaaggttttaagctctgtatctaaaaaaactgattttgtattg
gctggggcagatgctggaagcaaacttgaaaaagccttaagtttaggtgttaaggttata
tcagaagatgaattagaaagaatgataaatgagagctga
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