Comamonas piscis: HS961_14190
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Entry
HS961_14190 CDS
T11249
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpis Comamonas piscis
Pathway
cpis03030
DNA replication
cpis03410
Base excision repair
cpis03420
Nucleotide excision repair
cpis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HS961_14190 (ligA)
03410 Base excision repair
HS961_14190 (ligA)
03420 Nucleotide excision repair
HS961_14190 (ligA)
03430 Mismatch repair
HS961_14190 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpis03032
]
HS961_14190 (ligA)
03400 DNA repair and recombination proteins [BR:
cpis03400
]
HS961_14190 (ligA)
Enzymes [BR:
cpis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HS961_14190 (ligA)
DNA replication proteins [BR:
cpis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HS961_14190 (ligA)
DNA repair and recombination proteins [BR:
cpis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HS961_14190 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HS961_14190 (ligA)
MMR (mismatch excision repair)
DNA ligase
HS961_14190 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HS961_14190 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
DUF4796_N
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
QMV73892
UniProt:
A0A7G5EIR7
LinkDB
All DBs
Position
complement(3153281..3155377)
Genome browser
AA seq
698 aa
AA seq
DB search
MAENIDLFASPAAGDAPQDAATEVQALRAQLLQWAHEYYVQDAPSVPDGEYDRVYQRLEA
LEKAHPELHSADSPTQRVIGAILDGLTPVRHAVPMLSIRTETDNEASGAQAFDARIRKEL
GLDATDPAVEYVAEPKFDGLAMNLRYEAGRLVQATTRGDGEVGEDVTHNIRTIRQIPLQL
RPDAGAPPVLEVRGEVYMRRDAFDALNRKQEAAGGKTFVNPRNAAAGAVRQLDSSITAQR
PLSFFAYGVGEVTPAAQGGMQWDSHYAMLMQLRAWGFPVAPQVCVAKGAEELVAFHQRMG
AERANLGYEIDGVVYKVNSRALQQELGFVSREPRWAVAHKYPAQEMVTRLEGIDVQVGRT
GKLTPVARLAPVFVGGVTVTNATLSNVFDIRKKGVRVGDDVIVRRAGDVIPEVAGRVPGE
RAQYVPNFAMPRQCPVCGSDVVREKGEANHRCTGGLFCVAQRKEAILHYAHRRAMDIEGL
GDKLVDQLVDSGVIRSLPDLYKLGIATLSGLDRMAEKSAQNVLAALESSKKTSLARFLLG
LGIRHVGESTAKDLAKHFGVMDAIMDASVEDLLQVNDVGPVVANSLHTFFAQPHNREVVE
QLRAAGVHWDEAVPAEKPAQILAGMTVVLTGTLPTMGRDEAKDLLEAAGAKVSGSVSKKT
HYLVAGADAGSKLTKAQELGVTVLDEAAMLRLLQNGAP
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaatattgatcttttcgcatcacccgctgctggcgatgccccccaagatgcc
gccaccgaagtgcaggcgctgcgcgcgcagctgctgcagtgggcgcatgaatactatgtg
caggatgcgccctcggtgcccgatggcgaatacgaccgcgtctaccagcgacttgaagcg
ctggaaaaagcccaccctgaattgcacagtgcagattcgcccacgcagcgcgtgattggc
gcgatcctggacggactgaccccggtgcgccatgccgtgccgatgctcagcatccgcacc
gaaacggacaacgaggccagcggcgcacaggcctttgatgcccgcatccgcaaggagctg
ggcttggatgcgacggaccccgccgtcgaatacgtggccgagcccaagtttgatggcctg
gcgatgaacctgcgttacgaggcgggtcgcctggtacaggccaccacccggggtgatggc
gaagtgggcgaggatgtcacccacaatatccgcaccatccgccagatccccttgcagttg
cgcccggatgccggcgcgccgccggtgctggaggtgcgcggcgaagtctatatgcgccgc
gatgcttttgatgcgctgaaccgcaagcaagaagccgctggcggcaagacctttgtgaac
ccacgcaatgcagctgccggcgccgtacgccagcttgactcgagcatcaccgcgcagcga
ccgctgtccttttttgcctatggcgtgggcgaggtcacccctgctgcccagggcggtatg
caatgggacagccactacgcgatgctgatgcagctgcgcgcctggggctttccggtggcg
ccacaggtctgtgtggccaagggtgcggaagagctggtggccttccaccagcgcatgggg
gcggagcgtgccaacctgggttatgagatcgatggcgtcgtctacaaggtcaacagccgc
gcgctgcagcaggagctgggctttgtcagccgcgagccgcgttgggcggtagcgcacaag
tacccggcgcaagagatggtcactcggctggaaggcattgatgtgcaggtgggccgcacc
ggcaagctgacaccggtggcgcgcctggcgccggtatttgtcggcggtgtcaccgttacc
aacgccaccttgtccaatgtgttcgacatccgcaaaaagggtgtgcgcgttggggacgat
gtcatcgtgcgccgcgcgggcgatgtgattcccgaggtggcgggccgggtgcccggcgag
cgggcacagtatgtgcccaacttcgcgatgccccgccaatgcccggtctgcggcagcgat
gtggtgcgcgaaaaaggcgaggccaaccaccgctgcactggtggcctgttttgcgtggcc
cagcgcaaggaggccatcctgcactacgcacaccgtcgcgcgatggacattgaaggcctg
ggcgacaagctggtcgaccaactggtcgacagcggcgtgatccgcagcctgcccgacctc
tacaagctgggcatcgccacgctgtccggcctggatcgcatggctgagaaatcagcacag
aatgtgctcgccgcgctggagtcgtccaaaaaaaccagcctcgcccgctttctgctgggt
ctgggtattcgccatgtgggggaatccaccgccaaggacttggccaagcattttggcgtg
atggacgcgatcatggatgcctcggtcgaggacttgctgcaggtcaacgatgtggggccg
gtcgttgccaacagcctgcacaccttttttgcgcagccgcacaaccgcgaggtggtcgag
cagctgcgcgctgcgggggtgcactgggacgaagcggtgccggccgagaagcccgcgcag
atcttggcgggcatgaccgtggtgctgaccggcaccttgccgacgatgggacgcgatgaa
gccaaggacctgctggaagcggccggtgccaaggtctcgggctcggtcagcaagaagacc
cattacctggtggcaggcgcagacgctggcagcaagctgaccaaggcacaggagctaggc
gtgacggtgttggacgaagcggccatgctgcggcttttgcaaaacggcgcgccttga
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