Corynebacterium pseudotuberculosis 3/99-5: Cp3995_0882
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Entry
Cp3995_0882 CDS
T01689
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpl
Corynebacterium pseudotuberculosis 3/99-5
Pathway
cpl03030
DNA replication
cpl03410
Base excision repair
cpl03420
Nucleotide excision repair
cpl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cp3995_0882 (ligA)
03410 Base excision repair
Cp3995_0882 (ligA)
03420 Nucleotide excision repair
Cp3995_0882 (ligA)
03430 Mismatch repair
Cp3995_0882 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpl03032
]
Cp3995_0882 (ligA)
03400 DNA repair and recombination proteins [BR:
cpl03400
]
Cp3995_0882 (ligA)
Enzymes [BR:
cpl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Cp3995_0882 (ligA)
DNA replication proteins [BR:
cpl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Cp3995_0882 (ligA)
DNA repair and recombination proteins [BR:
cpl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Cp3995_0882 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cp3995_0882 (ligA)
MMR (mismatch excision repair)
DNA ligase
Cp3995_0882 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Cp3995_0882 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AEX39347
LinkDB
All DBs
Position
922486..924570
Genome browser
AA seq
694 aa
AA seq
DB search
MVQLPLKLNTNDKLDIVTDSNIELRRQWDELAEQVRYHRDAYYNDTPEISDQDFDALFRT
LQKLEEEHPELAVPDSPTLEVGAPVALSSSFNNVEHLERLMSLDNVFDAAELSEWLQRTP
AQAYLTELKIDGLSLDLIYRDGKLWRAATRGDGRIGEDVTENAKVIADVPHRLKENAEFP
IPELLEVRGEVFIAVEDFAAVNEQRQLEGGKPFANPRNAAAGSLRQKDVEAVKKRRLRMI
CHGLGATQGFTPASQYHAYEALAAWGLPVSPYTELVQSAAEVQEKVLYWAEHRHDAAHEM
DGVVVKVDSISEQRALGATARAPRWAIAYKYPPEEVTTELLDIQVGVGRTGRVTPFAVMR
PVFVAGSTVSMATLHNQTEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVEKRDGTEREFIF
PTLCPSCGTRLAPQKEDDADWRCPNSQSCPAQLSTRLTYLAGRGAFDIEALGEKAAEDLI
RTGVLIDEAGLFELTEEDLLKTRVYTTKKKTLNATGSKLLANLEQSKKADLWRVLVALSI
RHVGPTAARALASRYHSMDALREASAEEIADTEGVGAIIAQSFKDWFEVDWHAHIVEQWA
RAGVTMAEETSQLPEQTLAGMTVVVTGSLEGFSRDSAKEAIISRGGKASTSVSKKTDYVV
VGENAGSKETKARELGLTILDESGFIRLLENGSV
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggtgcaacttccgctgaagttaaataccaacgataaactagatatcgtgactgattcc
aatatcgaactccgcagacaatgggacgaactcgctgaacaagtgcgatatcatcgtgat
gcgtattataacgacacacctgagatcagtgaccaagattttgatgcgttgttccggacg
ctccaaaagcttgaagaggaacaccccgaactcgcagttccagacagccccacgctagaa
gtcggagcccctgtggctttgagctctagttttaataatgtagagcacctggaacgcctc
atgagcttagataatgtgtttgacgccgcagagctttctgagtggttgcaaagaacaccg
gcgcaggcttatctaaccgagttgaagatcgatggactttcactagaccttatttaccgc
gatggaaaattatggcgtgcggctactaggggcgatggcaggatcggtgaagacgtcacc
gaaaacgcaaaagtgattgctgatgtgccgcatcgacttaaggaaaacgcagagtttcct
atccctgaactgctggaggttcgaggtgaagtttttatcgctgtagaagactttgctgcg
gttaatgaacaacgccaattggagggaggaaaaccctttgctaatccgcgcaatgcggct
gccggctcattaagacaaaaagacgttgaagctgttaaaaaacgcaggcttcggatgatc
tgtcatggacttggtgctactcagggttttactcccgcgtcgcagtaccatgcgtatgag
gcattggcagcttggggcctgcctgtttctccttataccgagcttgtccagtcagccgca
gaagtgcaggaaaaggttctatattgggccgagcatcgccacgacgcagcgcatgagatg
gatggagttgtagttaaggtagacagcatctcagagcagcgagcgttgggggctacagcc
agagctccgcgctgggctatcgcctacaaatacccgccagaagaagttacaacggaactc
ttagacattcaggtaggagtgggcaggaccgggcgtgttactccctttgccgttatgcgt
ccagtctttgtcgccggatctactgtgtctatggctacgctgcacaaccaaacggaagta
aaacgtaaaggagtgctcatcggggacaccgtggtgatccgcaaagcaggtgaggtgatc
ccagaagttcttgggccggtagtggaaaaacgagacgggactgagcgcgagtttattttc
cctactttgtgtcctagctgtggtacccggcttgcgccgcaaaaagaggacgatgcggat
tggcgttgccctaattctcaatcgtgcccggcgcagttgagcacgcgtttaacctatcta
gcaggacgcggcgcttttgatattgaagctttaggagaaaaagcagcggaggatctcatc
cgtacaggggtgcttatcgacgaagccgggttgtttgagcttacagaagaagacctacta
aagactcgcgtgtacacaacaaagaagaagacgctgaatgcgactggctccaagttgtta
gccaacttggagcaatcgaaaaaagctgatctttggcgggtgcttgtcgcgctatctatt
agacacgttggtcccaccgccgcccgggcattagcgtcccgttatcactctatggacgca
ttgcgagaagccagcgcggaagagattgcggatactgaaggcgttggagcgatcatcgca
caaagttttaaagattggtttgaagttgattggcacgcccacatcgtagagcagtgggca
cgtgctggtgtgacgatggccgaagagacctcccaattgccggagcaaacactggcgggt
atgactgttgtggtcactggttctttggaaggctttagtcgcgattctgctaaggaagcc
atcatcagccgtggcggtaaagcctcaacatcggtgtctaaaaaaaccgattatgttgtg
gttggagaaaacgccggttctaaggaaactaaagcaagagaactaggactcaccattctt
gacgagtccggttttatccgactactagaaaacggatcggtataa
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