KEGG   Chiloscyllium plagiosum (whitespotted bambooshark): 122541513
Entry
122541513         CDS       T08871                                 
Name
(RefSeq) TNF receptor-associated factor 2-like isoform X1
  KO
K03173  TNF receptor-associated factor 2 [EC:2.3.2.27]
Organism
cpla  Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04010  MAPK signaling pathway
cpla04137  Mitophagy - animal
cpla04141  Protein processing in endoplasmic reticulum
cpla04210  Apoptosis
cpla04217  Necroptosis
cpla04621  NOD-like receptor signaling pathway
cpla04622  RIG-I-like receptor signaling pathway
cpla04920  Adipocytokine signaling pathway
cpla05132  Salmonella infection
cpla05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cpla00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    122541513
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    122541513
 09140 Cellular Processes
  09141 Transport and catabolism
   04137 Mitophagy - animal
    122541513
  09143 Cell growth and death
   04210 Apoptosis
    122541513
   04217 Necroptosis
    122541513
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    122541513
   04622 RIG-I-like receptor signaling pathway
    122541513
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    122541513
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    122541513
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    122541513
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpla03019]
    122541513
   04121 Ubiquitin system [BR:cpla04121]
    122541513
Enzymes [BR:cpla01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     122541513
Messenger RNA biogenesis [BR:cpla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     122541513
Ubiquitin system [BR:cpla04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRAF proteins
    122541513
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 TRAF_BIRC3_bd TRAF3_RING zf-C3HC4 zf-C3HC4_2 zf-C3HC4_4 zf-TRAF TRAF2_zf zf-C3HC4_3 zf-RING_2 zf-RING_UBOX zf-RING_4 zf-RING_5 zf-RING_10 MbeB_N ATG16 zinc_ribbon_2 Zn_Tnp_IS91
Other DBs
NCBI-GeneID: 122541513
NCBI-ProteinID: XP_043534268
LinkDB
Position
37:34638419..34653217
AA seq 449 aa
MSLLFVKQADSFLRSWKGSLSMKEAGEDQKDWHHDTRADQGFDHKYYCGACEHLMRDPVQ
TECGHRFCLECHWALLKESMPCPSCLRDNGMVENGSCATLEKCFRDRAIAKEILNLQVYC
RNEGCDWSGPLRELEGKHGPSCERRLLRCPFSFVGCREMVSGADLHQHKLSCIQQHLDYM
LEAFRQGLAKQAPGSGASLALPEGVLGDSDGEELPRDTEEQHDLRVRVQTFENIVTVLNR
EVANTSNTLMAQERKLKEQETVTTQLRNKIQQHEKSICLKDLVIADLQLRLDILEHTSYD
GTLVWAISDFTRKMQDAIDRKVPSIFSPPFFTAHCGYVLCLRLYLNGDGIGANTHLSLFL
VIMKGKYDAILEWPFSKKVTFRLLDQSARRQHVVTAFKPDISSASFQRPVQAMNIASGCP
EFLPLTQLHANWQGYVTDDVMFIKASVDS
NT seq 1350 nt   +upstreamnt  +downstreamnt
atgagcttgctgtttgtgaaacaagcagacagcttcctgaggagctggaagggttctctg
tccatgaaggaagctggtgaagatcagaaggactggcaccacgataccagggccgaccag
ggattcgaccacaaatactactgcggggcgtgtgagcacctgatgagggaccctgttcaa
acagagtgcggccaccgtttctgcctggaatgtcactgggccctcctgaaagaatctatg
ccttgcccatcctgcttacgagataacggaatggttgagaatggttcgtgtgccacgctg
gagaaatgtttcagggacagagccattgctaaggagatcctcaacctgcaggtctactgt
cgcaacgaaggctgtgactggagcggaccactccgggagctggagggtaagcatgggccg
agctgtgagcgcaggttgctgagatgtcccttcagcttcgtcggctgcagagagatggtt
tcaggggctgacctgcaccaacacaagctgagctgtattcagcagcacctggactacatg
cttgaggcctttcggcagggcctggcgaaacaggccccaggatcaggagccagcctggct
ctgccggagggggtcctgggcgacagtgacggtgaggaactgccgagggacacagaggaa
cagcatgatctgagggtgagggtgcagacctttgaaaacatcgtgaccgtgctgaatcgg
gaagtggcaaacacgtctaatactctgatggcccaggagaggaagctgaaggaacaggag
acagtgaccacacagctcagaaacaagatccagcagcacgagaaatcgatctgcctgaag
gacctggtcatcgctgacctccaactgcgtctcgatatccttgagcacacatcctacgac
ggcactttggtctgggccatctccgacttcacccgcaagatgcaagacgccattgacaga
aaagtgccctccatcttctccccaccgttcttcacagctcactgcggatacgtgctgtgt
ctgcgcctctacctcaacggggacggaatcggggcaaacactcacctctcactcttcctg
gtcatcatgaagggaaagtacgacgccatcttggaatggcccttcagcaagaaggtgacc
ttccgcctgttggatcagagtgccaggcgtcagcacgtggtgactgccttcaaaccagac
attagctctgcctccttccaaaggcccgtccaggccatgaacatcgccagtggctgccca
gagttcctgccccttacccagctccatgccaactggcagggttatgtcaccgatgatgtc
atgttcattaaggccagcgtggactcttag

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