Chiloscyllium plagiosum (whitespotted bambooshark): 122542122
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Entry
122542122 CDS
T08871
Name
(RefSeq) interferon regulatory factor 3-like isoform X1
KO
K05411
interferon regulatory factor 3
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04620
Toll-like receptor signaling pathway
cpla04621
NOD-like receptor signaling pathway
cpla04622
RIG-I-like receptor signaling pathway
cpla04623
Cytosolic DNA-sensing pathway
cpla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
122542122
04621 NOD-like receptor signaling pathway
122542122
04622 RIG-I-like receptor signaling pathway
122542122
04623 Cytosolic DNA-sensing pathway
122542122
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
122542122
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cpla03000
]
122542122
04131 Membrane trafficking [BR:
cpla04131
]
122542122
Transcription factors [BR:
cpla03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
122542122
Membrane trafficking [BR:
cpla04131
]
Autophagy
Other autophagy associated proteins
TRIM-directed selective autophagy
122542122
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
IRF-3
IRF
Motif
Other DBs
NCBI-GeneID:
122542122
NCBI-ProteinID:
XP_043535446
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All DBs
Position
39:complement(3736036..3756047)
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AA seq
478 aa
AA seq
DB search
MGSQKPLLCDWLIEQINSGLYPGLYWLNAERTRFQIPWKHHSRHDVSEDDFKIFEAWAIA
SGRYKPGIDVRDPIVWKRNFRSALNRKKHFHRVVDSRNNSERPHLIYEIQSIGQQSGASA
EEESEEVSPAIDSASPGLSSGSSPNVQGTLESSLRDMTIFDWESGGGGEGTMMEVGAAPY
SSDCALDYAVAPNNLSQIDPSGQPTAGADAACAMPLAVEDPNMVIPNVGEFQTQMRGYFQ
NGHFATEFEITIYYRGKRVKEQTLKNINGFRLFYTSESKFPYLEDLQFPDAASCLTDQQQ
IVYTNVLLEGMGQGLTVEVNNNQICAQRHGSCRAFWSMTEHPSSKEPRQISSRELTVLYG
LPQFHQELCAFLNSERGSPQYSIWLCFGELWPDCGDRPWHKKMIMVQVTPITFKLLHELA
HGVGASSLNGDSINLELSDPLSSSSLLSILEQCMDVEYTDSTSLGQLVSDDHCGDKRE
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgggttcccagaagccgttgttgtgcgattggcttattgagcagataaacagtgggctg
taccctggcctctattggctgaatgcggagagaactcgattccagatcccctggaaacat
cactcgaggcacgacgtttctgaagatgacttcaaaatatttgaggcttgggcgatagca
agtggccgatataagccagggattgatgttcgtgaccctattgtatggaagagaaacttt
cgcagtgctctgaatcggaagaagcattttcaccgcgtggttgacagtaggaataattct
gagagacctcacctgatttatgagatccagagcattggccagcagagtggggccagtgcc
gaggaggagagtgaggaagtcagtcctgccatcgacagcgccagccctggactctcctcg
ggctcatccccaaacgtgcaggggaccctggagagcagtttgcgagacatgacgatattc
gactgggagtcagggggcggtggagaaggaaccatgatggaagtgggagcggccccgtat
tcttccgactgtgctctggattatgctgtggctccaaacaacctgagtcaaatagacccc
agtggccagcccactgccggtgcagatgctgcctgtgcgatgccacttgcagtcgaagat
cccaacatggtcatcccaaacgttggcgagtttcaaacacagatgaggggctatttccag
aatggacacttcgcaaccgagtttgagataacaatctactatcgtggcaagagggtgaag
gagcagactttgaagaacatcaatggattccgactgttttacacatcggaatctaaattc
ccgtacctggaggacctccagttcccagacgcagcctcctgtttgactgaccagcaacaa
atcgtgtacacaaatgtgttgttggaggggatgggccaagggctgactgtggaagtgaac
aataatcagatctgcgcgcagagacacgggagctgtagggccttctggtcaatgacggag
caccccagcagtaaggaacctcgacagatctccagcagggagctcactgtcctgtatggc
ctgccccagtttcatcaagaactgtgtgcctttctgaactctgagcgtggctctccgcag
tattcgatttggctatgtttcggggagctctggccagactgtggtgatagaccctggcat
aagaagatgatcatggtgcaggtgacacctataaccttcaagctgttacatgaactggca
cacggagtgggagcctcctcactgaatggtgattctataaacctcgagctttctgacccc
ctctcctcctccagcctcctgtctatactggaacagtgcatggatgtcgagtacacagac
agtacctcccttggacaactggtctctgatgaccattgcggtgacaagagggagtga
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