Chiloscyllium plagiosum (whitespotted bambooshark): 122549043
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Entry
122549043 CDS
T08871
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cpla03036
]
122549043 (smchd1)
03400 DNA repair and recombination proteins [BR:
cpla03400
]
122549043 (smchd1)
Chromosome and associated proteins [BR:
cpla03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
122549043 (smchd1)
DNA repair and recombination proteins [BR:
cpla03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
122549043 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMCHD1_S5
HATPase_c_3
SMC_hinge
HATPase_c
Tiam_CC_Ex
Motif
Other DBs
NCBI-GeneID:
122549043
NCBI-ProteinID:
XP_043544152
LinkDB
All DBs
Position
4:complement(51564193..51693863)
Genome browser
AA seq
2040 aa
AA seq
DB search
MAAEQKRLPPAVTPDSTAGASVSVGAEKDSNKKVVFVFDRRLGDSLEKCLDLSSWNTFAE
FKSAVCRAFDITAGNNFVITTTNRKEIKSQNFEKSVKDGITLYILNSVDQILPSATRERI
DFLPHYDTLVKSGMYEYYASEGQTPLPFAFAELIDNSLSATANNKGIRNIQVRLLFDESQ
GKSAVAVIDNGRGMTSKQLNNWAVYRLSKFTRTDDDIESDHSGYVRPPMVPRSLNSDISY
FGVGGKQAVFFIGQSTRMITKPAESQDVHELMLSKDDFEKKEKNKEAIYSGFIRNRKATD
SMHITSEDERFLHSLIVEEKDKESFTAVIITGVQPTHVQYLKNYFHLWTRQLAHIYHYYI
HGPKGNDMTATKEVGPFNNIDIEISMFEKGKVPKIVNLREIKDDMQTLFINTAADCFEFK
AHVEGEGVVEGVIRYHPFLYDKETYPEDVSCTFNTVEDDEEDCYSVDKGARGKRPIFECF
WNGRLIPYTTVEDFEFCAPPKKRGLVALECYNRISGVLFTNDKFQVSTNKLTFMDLELKL
KDKNTLFTRVVNGQEQRMKIDREFAMWLKECHEKYDKQIKFSCYKGTITRSDLPSKRMQS
PWALYAGIEWDGKTFKAGDLVKTIKTMPIIYGRIVRFLLYGDHEGDVYSTGGEVQVAVEP
QALYDEVKTIPISKLDRTVAVSVIKKYIEDEMARLPDKLSVTWPEGDALTANESRQAGMP
IGALRIEILNKKGETMQKLPGTSHGGSKKLLVELKVIWHSSGGDKEIVSHISQHGGKWPY
WFKKMENINKLGNYTLKLQVVLNESNADTYAGRSLPSRIFKFTVTEGKPYKFTVGLLDPP
FRIAVPFNIPLDLQDEFGHSTQPTSVIKPIVEASVPCSGLDLHYEAFVAKGTSFIIKGVT
ARGSVTTCQGKNFTLKVILPGLKEDSQTLKIRLLPGPPRELRIKPDSNKVVIENGTTFPF
QAEVLDEAGNITAQPKLVVHCKFLGAPNLPVYTVDCSNTGTGILTGPVIQVQNIKKDQTL
KARIEISSCKDVPAVEKIIKLLPSTQVTKLQIFSIDGQKAIPIKHQDEIDWIAGDVIHHL
IFRMYDEGDRQIVVNSSLAEKIKVNWTPRVNREHLIQGLLPDVKVPCSIKDVRYCQVSYQ
DDHISLESAFTVKPQPDEPRLLKCSLKGLSTVQMGEELQGEIHATLSDRHGNQIQTLTSS
CVDLLGVAGEGLDKSKLKVTWQENTQNMVVRGIKFVPGATGQKELCFAWRDFVDYVRIHL
TAGPPTQISILEWGNSEESLSVVNGKTIDKPLVVQLCDAWGNPSPEPMIKVVLLKESGLK
LSPTPQLQKTDENGRASFGVFQIFAARGEYTIQAKAVVNKSAVDGPVIKLNVVPDPDKPV
SLHVDYNKNAAFVAGGFLTEFAVSVVSEDGSAMKNIKPADLTMRMWRGQRPSSNPTILNC
NKARDGDREGYFYFRDKMLPERTGVHTIQFAYSQDKTVLCGEQITFHVVPGEPVKLMPEE
QPATPTVSNVRAVTHRTLVKSLCLKVMDEYNNPTGEDICGKLVVTIRSATEDESEIPQFQ
GKLSSLEFELNQGSSVISNLVLAENCPGRDSTEYMLIFEPTISKPVKRNPLPPYILSFMF
YNDFKKQQQMTTLTKEKDQLSLSIIAYRSLFDTTNQLISEMKCQAHEATAKEAHLRNELQ
KQKINIAEVSTTQGIDTVLKQMKLERDRILKLPRRTCSLSNYTRNSADVLGKIAHLAMIE
DDEVARVISWHMASDMDCVVTLTTDAARRIFDESQGRQQVLPLDSIYRKNLPDAKRPLPH
MRNGKCHFKPEGNPIFARELLIFSENVEQCHTVFGMLLGDTIILDDLNAANQYRKEVVKI
THCPTLLTRDGDRIRSNGKFGGLQNKAPQIDKLRGLVFGAPLPKAYHTLNSQIDLIQQYR
SALIKLNNVNQELDLQLKYLGSPEMTLKHKELNEQENQLKQIEQQLGMTPTRATSDSSPK
AFALDLSDGQAPSKKMRRESAKKTYSTEEWVSIPLKKSQQPPSGSGMDTNGSTLSRKRKA
NT seq
6123 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgagcagaagcggctcccgccggccgtcacccccgactccacagccggcgcc
agcgttagcgtcggcgccgagaaggacagcaacaaaaaggtggtttttgtcttcgaccgc
cgcctcggagactcgctggagaaatgtctggacctcagtagctggaatacgtttgccgag
ttcaagagcgccgtgtgtcgggcttttgatattactgcaggaaataattttgtaattaca
acgacaaataggaaagaaattaaaagtcaaaactttgagaaaagtgtcaaagatggcatc
accttatatatacttaactcagtcgaccaaatactgccctcagccacaagggagcgaatt
gactttcttcctcactatgatacgttggttaaaagtggaatgtatgaatactatgccagt
gaaggacagactccattaccatttgccttcgctgaattgatagataattccttatctgca
acagccaataacaaaggaattcgcaatatacaggtccgactgttgtttgatgaatcacaa
ggtaaatcagcagttgctgtaattgacaacgggaggggaatgacatccaagcagcttaat
aactgggctgtctatcgactttccaagttcaccagaacagatgatgacattgaaagcgat
cattcaggatatgtccgtccacccatggtgcctcgcagtctcaatagtgacatttcttat
tttggtgttggtgggaaacaagcagttttcttcattggccaatcaactagaatgataacc
aaaccggctgaatctcaagatgtgcatgaattaatgctttctaaagatgattttgaaaag
aaggagaaaaataaagaagcgatatatagtggattcatccgaaacagaaaggcaactgat
tcaatgcacatcaccagtgaagatgaacgattcttgcatagtctcattgtggaagaaaaa
gacaaggaaagttttactgcagtaattatcacaggagttcagccgacccatgtgcagtat
ctgaaaaactacttccacctctggactagacaattggcccacatataccactactacatt
catggacctaaaggaaatgatatgacagctactaaagaagtaggaccctttaacaacatt
gatatagaaatctcaatgtttgagaagggaaaagtcccaaagatcgtgaatttaagggaa
ataaaagatgacatgcagactctcttcatcaacacagctgcagactgctttgaatttaaa
gcacacgtagaaggagaaggtgttgttgaaggagtaatacgttatcatccattcctctat
gataaagaaacctatcctgaagacgttagctgtacattcaatactgttgaggatgatgag
gaagactgttattctgttgataaaggagccagaggcaaaagaccaatatttgaatgcttt
tggaatggaagactgattccctacaccacagtggaagattttgagttttgtgcacccccc
aagaaaagaggactggtggctctggaatgttacaacaggatctcgggggtgctttttacc
aatgataagtttcaggtcagcaccaacaagttgacatttatggatttagaactgaagttg
aaggataagaacacacttttcacacgtgttgtgaatggccaggagcaaagaatgaagata
gacagagaatttgcaatgtggcttaaagaatgccatgagaaatatgacaagcaaataaag
ttcagctgttataaaggcacaatcacaaggagtgatctaccatctaaaagaatgcagagt
ccttgggctttatatgctggtattgaatgggatggcaagaccttcaaagcaggagacttg
gttaaaactatcaaaacgatgccaataatttatggacgcatagttcgtttcctcctttat
ggtgaccatgaaggtgatgtgtattctactggaggagaagtacaagtagctgtggagccc
caagctttgtatgatgaggtgaagaccattccaatctctaagttggatagaactgtagct
gtttctgtcatcaagaagtatatagaagatgaaatggcaagactccctgataaactgtct
gtaacctggccagaaggagatgcacttactgcaaatgaaagcagacaagcaggaatgcct
ataggtgctttaagaatagaaattctcaataaaaaaggcgaaactatgcagaaacttcca
ggaacaagtcatggtggatcaaaaaaactgttggttgagctgaaagttatttggcattct
tctggtggtgacaaagaaatagtttctcatatcagtcaacatggtggcaagtggccctat
tggttcaaaaagatggaaaatattaataaacttggaaactacacattaaaactacaagtg
gtattgaatgaaagtaatgcggacacatatgcagggaggtctcttccgagcagaatcttc
aaattcactgttacagagggaaaaccgtataaatttacagttggattgttggatcctcca
tttcgcattgctgtgcctttcaacattcctctagatttgcaagatgaatttgggcattct
acacaaccaacctctgttatcaagccaattgtggaggcaagtgtgccttgcagtgggtta
gacctacattatgaagcctttgtggcaaaaggaacaagtttcatcattaagggtgtaaca
gctcggggctctgtgaccacttgccaaggcaagaacttcactctgaaagttatcctccct
ggattgaaggaagattcgcaaacattaaaaattagactgttgcctggtccacctcgtgag
ctgagaattaagccagattctaataaagtggttattgaaaatggaaccaccttccctttc
caagctgaagtgctggatgaagcaggaaatattacagcgcagcccaaattggtggtacat
tgcaagtttcttggtgccccaaatttacctgtgtatacagtggattgtagtaacactggt
actggaattttaactggccctgtgatacaagtacagaatattaagaaagaccaaacgctg
aaagcaagaattgagatatcaagctgtaaagatgtgccagcagtggagaagataattaaa
ttgctaccgagcactcaagttacaaagcttcagatcttcagcatagatgggcaaaaagca
attcctattaaacatcaggatgaaattgactggattgctggagacgtaattcaccatctt
atctttcggatgtatgatgaaggcgatcggcaaattgttgttaattcatctctcgcagag
aaaattaaggtcaactggacccctcgggtaaatagagaacacttaattcaaggattgttg
cctgatgttaaagtaccatgctccattaaggatgtgcgttactgtcaagtctcctatcaa
gatgatcacatttcattggaaagtgcatttacggtcaagccacagccagatgaacctaga
cttttgaaatgttcattgaaaggattaagtactgttcagatgggtgaagagctacaagga
gaaatacatgcaacactttctgaccgacatggcaatcagattcaaaccctgacatcatct
tgtgtagacttattgggagtagctggagaaggactggacaaaagtaaactgaaagtgact
tggcaggaaaatactcagaatatggttgttcggggaataaagtttgtacctggagccact
ggtcagaaagaactttgttttgcttggcgtgattttgtggattatgtaagaattcatcta
actgcaggacccccaacccaaattagcatccttgaatggggaaattcagaagagtccctc
tcggttgtcaatggtaagaccattgataagcctttggttgtacagctttgtgatgcttgg
ggaaatccttctcctgagcctatgattaaagttgttctactaaaagaaagtggcctaaag
ttatctccaaccccacaactgcagaaaacagatgaaaatggaagggcaagttttggtgtg
tttcaaatttttgcagcaaggggagaatatacaatacaagctaaagctgtcgttaataaa
agtgcagttgatggcccggtgatcaaactaaatgtagtaccagaccccgacaaaccagtt
agcttgcatgtagactacaacaaaaatgcagcttttgttgctggtggatttttaacagaa
ttcgcagttagtgttgtttctgaagatggcagtgcaatgaagaatatcaaaccagcagac
ctcaccatgcgaatgtggaggggtcaacgcccatcatccaatccgacaattctaaactgc
aataaagcacgagatggtgacagagaaggatatttttatttcagggataaaatgcttcca
gagcggacaggagtacataccatccagtttgcgtattcacaggacaagaccgtgctctgt
ggtgaacagatcactttccatgtggtaccaggtgaaccagttaaattaatgccagaagag
cagccagccactcctactgtttcaaatgtccgcgctgtgactcatcgtaccttggtcaaa
agcttgtgtctaaaagtcatggatgaatataacaatccaactggagaggatatttgtggc
aagttggtggttacgattagaagtgcaactgaagatgagagtgagattcctcagtttcag
ggaaaactcagcagtttggagtttgagctcaaccaaggatcttctgttatttctaacttg
gtgctggcagaaaactgtcctggtagggatagtactgaatatatgctgatttttgaaccg
actatttcaaaacccgtcaagcggaatcctttacctccatacattttatcatttatgttt
tataatgattttaagaaacagcaacagatgacaactttgacgaaagagaaggatcaactc
tccctatccattattgcatacaggagtttatttgacaccaccaatcaactaatcagtgaa
atgaagtgtcaggcacatgaagctacagcaaaagaagctcacctaagaaatgaacttcaa
aagcagaagataaatatcgcagaagtttcgactacccaaggcattgatactgttctgaag
cagatgaaactcgaaagagacaggatattaaaactacccagaagaacatgttctctgtct
aattacaccagaaacagtgctgacgttttaggaaagattgcacacttggcaatgatagag
gatgatgaggtggccagggtaatctcttggcatatggctagcgatatggactgcgtggtt
actttaaccactgatgctgctcgccgtatcttcgatgaaagtcaggggcgccaacaagta
ttaccgctagattccatatacagaaaaaatcttccagatgctaaaaggcctttacctcac
atgcgaaatggaaaatgtcatttcaagcctgaggggaatccaatatttgcccgggaactg
cttattttttctgaaaatgtggagcagtgtcacacagtgtttggaatgcttcttggagat
acaattattctagatgacttaaatgctgccaatcagtatagaaaagaggttgtgaaaatc
acccattgccctaccttgctgaccagagatggggacagaattcgaagcaatgggaagttt
ggaggccttcaaaacaaagctccacaaattgataaacttcgaggactggtgtttggagct
cctctaccaaaagcttatcatacactgaattctcaaattgatcttatccagcaatatcgc
tctgctctgatcaagcttaataacgtcaatcaggaactggatctgcagctgaaatatctt
ggttctccagaaatgaccctgaagcacaaagagcttaatgaacaagagaaccaactcaag
caaatagagcaacagctaggaatgactccaacaagagcaacttctgacagcagtcccaaa
gcatttgcgttagatttatctgatggacaggctccaagcaaaaaaatgagaagagagagt
gcgaagaaaacatatagtacagaagagtgggtttcaatacctttgaaaaaatcacagcag
ccaccttcaggatctggaatggacacaaatggaagtactttgtcacggaaaagaaaggct
tag
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integrated database retrieval system
