Chiloscyllium plagiosum (whitespotted bambooshark): 122552209
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Entry
122552209 CDS
T08871
Symbol
ldlra
Name
(RefSeq) low density lipoprotein receptor a isoform X1
KO
K12473
low-density lipoprotein receptor
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
122552209 (ldlra)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpla04131
]
122552209 (ldlra)
Membrane trafficking [BR:
cpla04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
122552209 (ldlra)
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Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
EGF
EGF_3
Motif
Other DBs
NCBI-GeneID:
122552209
NCBI-ProteinID:
XP_043550758
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Position
8:96222714..96240572
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AA seq
864 aa
AA seq
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MEKTIVLLPLLTACLLHRAAAVTGLCDKDHFQCGDGKCIRVHWLCDGQSECDDGSDESLE
TCRNKTCSALEFSCGGRVNKCIPTSWHCDSQKDCENGSDEENCPARLCKDHEFQCNDGNC
ISLKFVCDDDRDCADGSDENACPERTCGPHLFQCAKSKLCIPQLWACDDDPDCPDESDEW
PQNCGRSSTFAPPNPCSSLEFHCGSGECIHMKWRCDGGVDCRDQSDEAGCAVATCRPDEF
QCSDGTCIHGSFQCNREFNCHDQSDEIGCVNVTKCESPHKFKCTSGECIMMDKVCDSHRD
CRDWSDEPLKECGENECLNENGGCSHICKDLKIGYKCLCRPGFRLIDNAKCEDIDECENP
DTCSQNCINLEGGFKCECKEGYQMDPMTRQCKAIGTVAYLFFTNRHEVRKLTLDRSEYTQ
LIPRLKNVVALDMEVAANKIYWADLFQKKIFSAHMDQTENSSHHSTVIETEIQAPDGLAV
DWIHQNIYWTDFVTSTISVANTAGTKRKVLIKEQLSKPRAIAVDPVHGFLYWSDWGSPAK
IEKGGLNGVDRMPLVTAGIEWPNGITLDLVNQRLYWVDSKLHTLSSIGVAGDNRKTLIIS
PEKLTHPFSVALFEDKVFWTDMDHEAIFSANRLTGGDILTVIENLDVPQDIVLYHNLRQP
KGINWCEQNGQVNGGCEHLCLPAPQINVHSPKYTCVCPDGMQLGPDMRKCIPAPVMPTKS
STDKSGPNYAKTATTKSITTTRKMNTQTAHVPSDNTVYSTVPTLHELLTVSHPAGGEVAA
KAATEGHRGTNALWIVLPLAILSLLATATYFIWKNWKLKNTNSINFDNPVYQKTTEDDEV
HITRNQVGYTYPTRAVVSLEDYGA
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggagaaaacgatcgttttgctgccacttcttacagcatgtttgttgcatcgtgccgct
gccgtgactggactttgtgacaaggatcacttccaatgtggtgatgggaaatgtattcga
gtacattggctgtgtgatgggcaatctgaatgtgatgatggttcagatgagtcactggag
acatgtaggaataagacctgcagtgctcttgagttcagctgtggtggccgtgttaacaag
tgtattcccacatcctggcattgtgactcccaaaaggactgtgaaaatggctccgatgag
gagaactgccctgcacgtctttgcaaagaccatgagttccagtgcaatgatgggaattgc
atctctttgaaatttgtctgtgatgacgatagggactgtgcagatggcagtgacgagaat
gcatgtccagagcggacctgtggacctcacttgttccagtgtgccaagagcaagctttgt
atcccacagctctgggcctgtgatgacgatccagattgccctgatgaatcggacgagtgg
ccacagaattgtggacgatcctccacctttgcaccacctaatccctgctctagtctagaa
tttcactgtggcagtggagagtgtatccacatgaaatggcgctgtgatggcggtgtagac
tgtcgggatcaatctgatgaagcgggctgtgctgtggcaacctgtcggccagatgaattt
cagtgcagtgatggaacctgtattcatggaagcttccagtgtaatagggagttcaactgc
catgaccagagtgacgaaattggctgtgtcaatgtgaccaagtgtgagagtccacacaag
ttcaagtgcacaagtggtgaatgtataatgatggacaaagtttgtgactctcatcgggac
tgtagagattggtcagacgagcctttgaaggagtgtggtgaaaatgaatgtctgaatgaa
aatggtggatgctctcacatctgcaaagatctgaagattggctacaagtgtctctgtcgt
cctggtttcagactaattgataatgcaaagtgtgaagatatcgatgagtgtgagaatcca
gacacatgcagccaaaactgtatcaacctggaaggtggatttaagtgtgagtgtaaggaa
ggctatcaaatggacccaatgaccaggcaatgcaaagctattggtacagttgcctaccta
ttcttcaccaatcggcacgaggtcagaaagcttacccttgatcggagtgaatatacacag
ctgatccccaggctgaagaatgttgtggcactagacatggaggtggctgcaaacaaaata
tactgggctgatttgtttcagaaaaaaatcttcagtgcccacatggatcaaactgagaac
tcttcccatcattccactgtgattgaaactgaaatccaggcaccagatggcttggctgtg
gactggattcaccagaacatatactggacagattttgtaaccagcaccatctctgtagct
aacacagctggaacaaagaggaaggttctcattaaagaacaactttcaaagcccagggcc
attgcagtggatccagttcatggcttcctgtattggagtgattggggctcccctgctaag
attgaaaaaggagggttgaatggagtggaccgtatgccactggtcactgcaggaattgaa
tggccaaatggaatcaccttggacttggtgaatcagcgactgtactgggtggactcaaag
ttgcataccttgtctagtattggtgttgctggagacaacaggaaaaccttgatcatctcc
ccagagaaactgactcatcccttctctgtagctttgtttgaggacaaggtattttggact
gatatggatcatgaagccattttcagtgccaacagactcacagggggtgatattctaaca
gtcattgagaacctggatgttcctcaagatattgtcctctaccataatctccgacaaccc
aaaggtattaattggtgtgaacagaatgggcaagtaaatggtggctgtgaacacctgtgc
cttccagcaccacaaatcaatgttcattctccaaaatacacttgtgtttgcccagatgga
atgcaactgggaccagacatgagaaaatgtatcccagctcctgtcatgcctaccaagtca
agcacagacaaaagtggtcctaattatgctaagacagctacaactaaaagtatcactaca
actaggaaaatgaacacccagaccgcccatgttccctcagacaacactgtatactcaaca
gtccctactctccacgagctgctcactgtttcccatccagcagggggtgaggttgcagct
aaagctgctacagaaggccaccgagggactaatgccttgtggattgttctacctcttgcc
atcctgtcattgcttgctactgctacttatttcatttggaaaaactggaaattgaagaac
accaacagtattaacttcgataatccagtctaccagaaaaccactgaagatgatgaagtt
catataacccggaaccaagttggctacacttatcctacgagagctgttgtgagtttagaa
gattatggtgcttga
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