Chiloscyllium plagiosum (whitespotted bambooshark): 122553720
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Entry
122553720 CDS
T08871
Symbol
thbs1b
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04115
p53 signaling pathway
cpla04145
Phagocytosis
cpla04148
Efferocytosis
cpla04350
TGF-beta signaling pathway
cpla04510
Focal adhesion
cpla04512
ECM-receptor interaction
cpla04518
Integrin signaling
cpla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
122553720 (thbs1b)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
122553720 (thbs1b)
04518 Integrin signaling
122553720 (thbs1b)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
122553720 (thbs1b)
04148 Efferocytosis
122553720 (thbs1b)
09143 Cell growth and death
04115 p53 signaling pathway
122553720 (thbs1b)
09144 Cellular community - eukaryotes
04510 Focal adhesion
122553720 (thbs1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
122553720 (thbs1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpla04131
]
122553720 (thbs1b)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cpla00536
]
122553720 (thbs1b)
Membrane trafficking [BR:
cpla04131
]
Endocytosis
Phagocytosis
Opsonins
122553720 (thbs1b)
Glycosaminoglycan binding proteins [BR:
cpla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
122553720 (thbs1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
VWC2L_2nd
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
cEGF
EGF
TSP1_CCN
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
122553720
NCBI-ProteinID:
XP_043553902
LinkDB
All DBs
Position
10:complement(65012110..65028468)
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AA seq
1168 aa
AA seq
DB search
MKPLQGLFLLLMIVACSPKQIQDAGVDGVFDLFDITGLTRKNVGVHMVKGPEASSPAYRI
LNPDLIAPASENSFSELIDHIQQEKGFIFLATLRQMKKSRGTLVAIDTLQGTRIFEILSN
GKANTLDLTITIEGKQSMVSITDAHLANARWKNLTLFVQEDVATLYVGCEKVNGVELEAA
IHKVLKPGDYSLRLAKGGPGLRNNFQGVLQNVRFVFGTNLETILMNKGCYNTAPGILPLP
IRGSESPAIRTNFYGHKPKDLQTVCGISCEELSNMFSELQALRTMVTQLVNNVQKVTAEN
ELIAKRIGIKQIGGCFHNGMTYKDKDQWKVDNCTDCTCQSSVTFCQRISCPTVSCADAVV
PDGECCARCPSIPNESEAGWSPWSEWTHCSVTCGIGTQQRGRSCDRINSDCHGTSVQTRS
CHLEECDKRFKQDGGWSYWSPWSSCSVSCGAGVITRIRLCNSPMPQMGGKECEGPKRETE
KCEQVPCPIDGNWGVWSPWNSCSVTCGGGIQKRTRLCDSPAPEYEGKNCVGESRETQLCN
KLECPIDGCLSNPCFAQSKCTSFPDGSWTCGPCPHGYRGDGIHCEDINECSEVPDTCFQV
NGEQRCENTEPGYNCLPCPLRYTGNQPFGRGIEEATKNKQVCEPRNPCKDGTHNCNKHAR
CIYLGIFSDQMFRCECRPGFAGNGIICGEDTDLDGWPNKDLTCVINATYHCKKDNCPSLP
NSGQEDHDKDGVGDACDNDDDNDGIPDERDNCAFLFNPRQYDYDRDDVGDRCDNCPYDHN
PDQTDTDANGEGDACAIDIDGDGILNEKDNCPHVYNVDQRDTDLDGVGDQCDNCPLEHNP
EQTDSDSDLVGDKCDNNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDDDNDG
IPDEKDNCRLKANPNQTDSDGDGRGDACKDDFDGDSILDIYDVCPENFEITETDFRKFQM
VPLDPKGTSQIDPNWVVRHKGKELVQTVNCDPGIAVGYDEFNAVDFSGTFFINTERDDDY
AGFVFGYQSSSRFYVVMWKQITQTYWLDTPTRAQGYAGLSIKVVNSTTGPGEHLRNALWH
TGNTEGQVQTLWHDPRNIGWKDRAAYRWQLTHRPKTGFIRVVMYEGRKIMADSGAIYDKT
YAGGRLGLFVFSQEMVYFSDLRYECRDS
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgaagccactgcaaggactctttctacttttaatgattgttgcttgttcgcccaagcaa
atccaagacgccggagtggatggtgtctttgatctgttcgacatcactggcctgactcgc
aaaaatgtaggggtgcatatggtaaaggggccggaggcgagcagcccggcttacaggatc
ctgaaccctgacctcattgccccggcttcagagaacagcttcagtgagctgatcgaccac
attcagcaggagaagggcttcatcttcctcgccaccctgcgccagatgaagaaaagccgg
ggcaccttggtggccatcgacacgctgcaggggacacgcatcttcgagatcctgtccaac
ggcaaggcgaacactctcgacctgaccatcaccatcgagggcaaacagagcatggtgtcc
atcaccgatgcccacctggccaatgcccgctggaaaaacctcaccctgttcgtgcaggag
gacgtggccacgctctatgtgggctgtgagaaggtcaatggcgtggagctagaggcggcc
attcacaaagtgctgaagcctggtgactacagcctgaggctagccaaaggcggaccgggt
ctccggaacaacttccagggagtactgcagaacgtgcgctttgtttttgggaccaacttg
gaaaccattctgatgaacaagggctgctacaacactgctccaggaattcttcctttacca
atcaggggctctgaaagcccagccatcaggaccaatttttacggtcacaaacccaaagat
cttcagacagtctgcggcatctcctgcgaggaactgtccaacatgttctctgaactgcaa
gctctcaggacaatggtcacccagctggttaataatgtccaaaaagtgactgcagaaaat
gaattaattgccaaaaggattggaatcaaacagataggaggatgttttcacaatggcatg
acctacaaagacaaagatcaatggaaagtggacaactgcacagactgcacttgtcagtca
tcagtcaccttctgccagaggatttcctgccctactgtgtcatgtgctgatgctgtagtc
ccagatggggagtgctgtgcccgctgtccatcaattccaaatgaatctgaggctggctgg
tctccctggtctgaatggacacattgttctgtcacctgtggaattggaacccagcagcga
ggccgctcctgcgatcggattaatagtgactgtcatgggacctctgttcagactcgaagc
tgtcatttagaagaatgtgacaagagattcaaacaagatggtggttggagttattggtcc
ccttggtcgtcatgctcagtgagctgtggagctggagtgatcactcgcatccgcctgtgt
aactccccaatgccacaaatgggtggcaaagagtgtgagggaccgaagcgggaaactgag
aagtgtgaacaagtcccatgcccaattgatgggaactggggtgtttggtcaccatggaac
tcttgttccgtcacctgtggaggaggaattcagaaacgcacacgtctttgtgacagtcca
gcaccggaatatgaaggcaaaaattgtgtgggagaatcccgggagactcagctatgcaac
aaactggagtgcccaattgatggatgtttatcaaatccatgctttgctcaaagcaagtgt
acgagctttccagatggctcctggacgtgtggtccctgccctcatggttacagaggagat
ggtattcattgcgaggacatcaatgagtgctcagaagtgcctgatacctgttttcaagtc
aatggggagcaaaggtgtgaaaacactgaaccaggttacaattgtctgccctgcccactg
cgatacactggcaatcaaccgtttggcagaggcattgaggaggctacaaagaataagcag
gtctgtgagccacgtaacccctgcaaagatggcacacacaattgcaacaagcatgccaga
tgcatttaccttggtatcttcagtgaccagatgttccgttgtgaatgcaggcctggtttt
gctggcaatggcatcatctgtggagaggatactgacttggacggttggccaaataaagat
ctcacctgtgtgatcaatgctacttaccactgtaaaaaggacaattgtccatcactcccc
aattctggacaagaagatcacgataaggatggagttggtgatgcctgtgataatgatgat
gataatgatggcattccagatgagagggacaattgcgcattcctgtttaatcctcgtcaa
tatgactatgatcgggatgatgttggagatcgctgtgacaactgcccctacgaccataac
cctgaccagacagacactgatgcaaatggagagggagatgcctgtgccattgatattgat
ggagatggcattctgaatgagaaggacaactgcccacatgtgtacaatgttgaccagagg
gatacagatttagatggtgttggtgatcagtgtgataattgtccgttagaacacaatcca
gaacaaactgactcagactctgaccttgtaggagataaatgtgataataaccaggatatt
gatgaagatggtcaccagaataacctggataactgcccctacatccccaatgctaaccag
gcagatcacgacaaggatggaaagggtgatgcctgtgatcatgatgatgataatgatggt
attcccgatgagaaggacaattgtaggttgaaagccaatcctaaccaaactgattctgat
ggtgatggccgaggtgatgcttgcaaggatgattttgatggagacagtattctggacatc
tatgatgtttgtcctgaaaactttgaaatcactgagactgacttccgcaaattccaaatg
gtaccactggatcccaagggaacatcccaaattgaccccaactgggtagtcagacataaa
ggcaaagagttggtacagactgttaattgtgatcctggcattgctgtaggatatgatgaa
ttcaatgctgtggactttagtggtactttcttcataaatactgaacgagatgatgactat
gctggatttgtatttggataccagtccagcagtcgcttctatgtggtaatgtggaagcag
atcacacagacctattggcttgatacaccaaccagagcacagggctatgctggactctct
atcaaagtggtgaactctacaactgggccaggagagcacttgcgtaatgcactctggcac
actggcaatacagaaggacaggttcaaacattgtggcatgatccacgtaacattggttgg
aaggacagggctgcttacagatggcagttaacccacagacccaagactggattcatcaga
gtcgtaatgtatgaagggagaaagatcatggctgactctggggccatctatgacaagact
tatgctggtggacgattgggtctcttcgtcttctctcaagaaatggtttacttttctgat
ctccgatacgagtgtagagattcataa
DBGET
integrated database retrieval system
