Chiloscyllium plagiosum (whitespotted bambooshark): 122557956
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Entry
122557956 CDS
T08871
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04010
MAPK signaling pathway
cpla04120
Ubiquitin mediated proteolysis
cpla04140
Autophagy - animal
cpla04144
Endocytosis
cpla04620
Toll-like receptor signaling pathway
cpla04621
NOD-like receptor signaling pathway
cpla04622
RIG-I-like receptor signaling pathway
cpla05132
Salmonella infection
cpla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
122557956 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
122557956 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
122557956 (traf6)
04140 Autophagy - animal
122557956 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
122557956 (traf6)
04621 NOD-like receptor signaling pathway
122557956 (traf6)
04622 RIG-I-like receptor signaling pathway
122557956 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
122557956 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
122557956 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cpla04131
]
122557956 (traf6)
04121 Ubiquitin system [BR:
cpla04121
]
122557956 (traf6)
Enzymes [BR:
cpla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
122557956 (traf6)
Membrane trafficking [BR:
cpla04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
122557956 (traf6)
Ubiquitin system [BR:
cpla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
122557956 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
zf-C3HC4_2
zf-TRAF_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
U-box
zf-RING_5
CENP-F_leu_zip
SlyX
RING_XB3-XBAT31
TRAF3_RING
DUF7310
TMF_DNA_bd
zf-RING_11
TRAF6_Z2
DM
DUF16
Filament
BRE1
DUF7607
Zn_ribbon_ACC
Motif
Other DBs
NCBI-GeneID:
122557956
NCBI-ProteinID:
XP_043562160
LinkDB
All DBs
Position
16:complement(61062410..61109348)
Genome browser
AA seq
550 aa
AA seq
DB search
MVDCDSGRDSTFQSSCCTVSSGTMDDCSNHGQYSQSVYEEMQGYDVEFDPPLENKYECPI
CLMALREAVQTPCGHRFCRGCIVKSIRDAGHKCPVDNEMLTEAQLFPDNFAKREILSLIV
KCPNKGCYQKMELRHLEEHQEQCEYTFVDCHQCDALLWRKELQEHMESDCPKRRVACENC
AMLMAFQDKKGHDQNCPLANVTCEYCNMELIREQMQNHYNLDCPKAPVPCTFSAFGCPEK
MQRNDLAMHLQDYTQAHMRMMAQTLRSVSIGLSSHVPSIDILNSEDDFQPVTLPGSLQAS
HSQSSPALGVSPSCDCSPLIQNLRETVQQLEGRLVRQDHQIRELTAKMETQSGQVGDLKR
SARALEQRVRELEAQQCNGIFIWRVENFANHLQAQAEDQPVVLHSPGFYTGKPGYKLCLR
LHLQSPSAQRCSNYISLFVHTMQGEYDSYLSWPFQGTIRLSILDQSEGPIRQNYEEIMES
KPELLAFQRPTQCRNPKGFGYVTFLHLKALQQRTYVKDDMLLVRCEVMTRSDLNWMRKDD
FQARSAEGGL
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atggtggactgtgacagtggccgtgattccacattccagagctcctgctgcaccgtgagc
agtgggacaatggacgattgcagcaaccatggacagtactcccagtctgtctacgaggag
atgcagggctatgatgtggaatttgacccgccgctggagaataaatacgagtgtcccatt
tgtctgatggcgttaagggaggcggtgcagacaccctgtggtcacaggttctgtagaggc
tgcattgtaaaatctatcagggatgctggacacaagtgccctgtggataatgagatgttg
accgaagcccaactttttccagataattttgcaaaacgggaaattctttcccttatagtc
aagtgtcccaacaagggctgctatcagaaaatggagctacgacatttggaggaacaccaa
gagcagtgcgaatacacctttgttgactgtcatcaatgtgatgctttgctctggcgaaag
gagctgcaggagcacatggaatcggactgtcctaagagacgtgttgcctgtgagaactgt
gccatgctgatggcctttcaggacaaaaagggtcatgatcagaattgtcctttggccaac
gttacctgtgaatactgcaacatggagctaatccgagaacagatgcagaaccattataac
ctggactgtccaaaagcacccgtcccctgcacttttagtgcctttggctgcccagaaaag
atgcagaggaatgacctggcgatgcacctacaggattatacacaggctcacatgcggatg
atggcccagacgctgcgcagtgtaagcataggactaagctcccatgtgccatccattgac
atcctgaattcagaagatgacttccagccagtgacactccctggatcactgcaggcctca
cactctcagtcatcgccagcacttggggtatcaccatcttgtgactgctcacctctgatc
cagaacctgagggagactgtccagcaactggagggccgtctggtccggcaggatcatcag
atccgggagctcaccgctaagatggagacacagagcggccaggtgggggatctgaaacgg
agtgcccgggcgctggagcaacgcgtccgtgagttggaggcacagcagtgcaatgggatt
tttatctggagggtggaaaacttcgccaaccacctgcaggcgcaggcagaagatcagcca
gtggtgctgcacagccctggcttttatacaggcaagccagggtacaagctctgcctccgt
ctgcacttgcagtcgcccagtgcccagcgctgctccaactacatctcactctttgtacac
accatgcagggtgaatatgacagctacctgagctggccctttcagggcaccatccggctc
tctatacttgaccagtcggagggcccaatcaggcagaactacgaggagatcatggagagc
aaacctgagttgctggccttccagcggcctactcagtgccgcaacccgaagggcttcggc
tacgtcaccttcctgcacctcaaagccctccagcagcgcacctacgtgaaagatgacatg
ctgctggtccgatgtgaagtcatgacacgttctgatctgaactggatgaggaaggatgac
ttccaagcccgctcagcagaaggcggtctgtga
DBGET
integrated database retrieval system
