Chiloscyllium plagiosum (whitespotted bambooshark): 122558786
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Entry
122558786 CDS
T08871
Symbol
lsm3
Name
(RefSeq) snRNA-associated Sm-like protein LSm3 isoform X1
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03018
RNA degradation
cpla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
122558786 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
122558786 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cpla03019
]
122558786 (lsm3)
03041 Spliceosome [BR:
cpla03041
]
122558786 (lsm3)
Messenger RNA biogenesis [BR:
cpla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
122558786 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
122558786 (lsm3)
Spliceosome [BR:
cpla03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
122558786 (lsm3)
Complex C
U2 snRNP components
122558786 (lsm3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
TIG_SUH
vATP-synt_E
DUF150_C
Motif
Other DBs
NCBI-GeneID:
122558786
NCBI-ProteinID:
XP_043563497
LinkDB
All DBs
Position
18:1756110..2023077
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AA seq
105 aa
AA seq
DB search
MQTMAEEGDQPQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDV
EETVTTVEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLRVV
NT seq
318 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccatggcggaggagggagatcagccacagacaaccaacacagttgaggagcct
cttgacctgatccgactcagtttggatgagagaatttacgtgaaaatgagaaacgacaga
gaacttcgggggagattacacgcctacgatcagcatttaaacatgattttgggtgatgtt
gaagaaactgttacaactgtagaaatcgacgaggaaacgtatgaggagatatacaaatcc
accaagagaaatattccaatgctgtttgtccgtggtgatggtgttgttctagtggcgcct
ccactaagagttgtttaa
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