Chiloscyllium plagiosum (whitespotted bambooshark): 122559424
Help
Entry
122559424 CDS
T08871
Symbol
cacna1c
Name
(RefSeq) voltage-dependent L-type calcium channel subunit alpha-1C
KO
K04850
voltage-dependent calcium channel L type alpha-1C
Organism
cpla
Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04010
MAPK signaling pathway
cpla04020
Calcium signaling pathway
cpla04260
Cardiac muscle contraction
cpla04261
Adrenergic signaling in cardiomyocytes
cpla04270
Vascular smooth muscle contraction
cpla04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
cpla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
122559424 (cacna1c)
04020 Calcium signaling pathway
122559424 (cacna1c)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
122559424 (cacna1c)
09153 Circulatory system
04260 Cardiac muscle contraction
122559424 (cacna1c)
04261 Adrenergic signaling in cardiomyocytes
122559424 (cacna1c)
04270 Vascular smooth muscle contraction
122559424 (cacna1c)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
cpla04040
]
122559424 (cacna1c)
Ion channels [BR:
cpla04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
122559424 (cacna1c)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
CAC1F_C
PKD_channel
DUF4834
Motif
Other DBs
NCBI-GeneID:
122559424
NCBI-ProteinID:
XP_043564807
LinkDB
All DBs
Position
19:23697084..24587187
Genome browser
AA seq
2187 aa
AA seq
DB search
MVNEKERMYIPEENHQGTNYGSSRTVFAHGLPNARTDGLAPEHIPSPGAALSWQAAIDAA
RQAKAAAMMGNNMVSTVNSTQRKRQQYSKQKKQANAATTRPPRALFCLTLKNPLRRACIN
IVEWKPFEIIILLTIFANCVALAVYIPFPEDDSNATNSNLERVEYLFLIIFTVEAFLKVI
AYGLLFHPNAYLRNGWNLLDFIIVVVGLFSAILEQATKAEGINPIGGKAAGFDVKALRAF
RVLRPLRLVSGVPSLQVVLNSIIKAMVPLLHIALLVLFVIIIYAIIGLELFMGKMHKTCL
FNETDTVAEEEPAPCSLNIGHGRRCSNGTLCKSGWVGPNDGITNFDNFAFAMLTVFQCIT
MEGWTDVLYWMQDAMGYELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDF
QKLREKQQLEEDLKGYLDWITQAEDIDPENEDEGMDEDKPRNLSMPTSETESVNHENVAG
AELEDLNCCTKVGHRISKSKFSRYWRRWNRFCRRKCRAGVKSSVFYWLVIFLVFLNTLTI
ASEHYNQPEWLTLVQDTANKVLLALFTGEMLLKMYSLGLQAYFVSLFNRFDCFIVCGGIL
ETILVETKIMSPLGISVLRCVRLLRIFKITRYWNSLSNLVASLLNSVRSIASLLLLLFLF
IIIFSLLGMQLFGGKFNFDEMETKRSTFDNFPQSLLTVFQILTGEDWNSVMYDGIRAYGG
PSFPGMLVCIYFIILFICGNYILLNVFLAIAVDNLADAESLTSAQKEEEEEKERRKLARN
SSPEKSTDNEKQPIDEEKKLEKIELKTITADGDVPPATKIELEDYQVEDNEEKNPYPTNE
FPGDEDDEEPEMPVGPRPRPLSELHIKEKAVPMPDASAFFVFSTTNRFRVLCHRIVNDNI
FTNLILFFILMSSISLAAEDPVHQNTRRNQVLTYADYVFTSIFTVEIILKMTAYGAFIHK
GSFCRNYFNILDLVVVSVSLISFGMDSSAIAVVKILRVLRVLRPLRAINRAKGLKHVVQC
VFVALRTIGNIVIVTTLLQFMFACIGVQLFKGKLYTCSDGSKQREFECKGQYILYKDGDV
NQPMIRDRKWENSEFNFDDVPSAMMALFTVSTFEGWPQLLYRAIDSHTEDAGPIYNYRVE
ISIFFIIYIIVIAFFMMNIFVGFVIVTFQEQGEQEYKNCELDKNQRQCVEYALKARPLRR
YIPKNTYQYKVWYVVNSTYFEYLMFVLILLNTICLAMQHYGQSQTFGQAMDVLNMLFTGL
FTVEMILKLIAFKPRGYFSDPWNVFDFLIVIGSIIDVILSEINHYFCDAWNIFDALIVVG
SVVDIAITEVNVSNHLNEHACSTSVCYTSIHIQFYVCNVILFPAPKPVALHSFKEVMKEL
GEIMGADSQLMVFSLSLQALPYVALLIVMLFFIYAVIGMQVFGKIAMIDGTQINRNNNFQ
TFPQAVLLLFRCATGEAWQEIMLSCLPGRHCEKEPTRHETELNCGTYFAFFYFVSFYMLC
AFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWAEYDPEAKGRIKHLDVVTLLRR
IQPPLGFGKLCPHRVACKRLVSMNMPLNSDGTVMFNATLFALVRTALRIKTEGNLEQANE
ELRAIIKKIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQDYFRKFKKRKEQGIVGKA
VQKNALSLQAGLRTLHDIGPEIRRAISGDLTAEEELEKAMKEAASAASEDDIFRRAGGLF
GNHVGYYPSDCRGSFPQTFTTQRPLHLNKSGTSQVEVESPSHEKLVDSTFTPSSYSSSGS
NANINNANNTAISRFPIPVNYQSTVSTVDGHSNSLTSALILQGTTWRINPKRTRYYETLV
RSDSEDSSLPIIQREEAYPDEIYDENFNEDPDCCSEDSILSSQLNSYKEHDEKQLTPPVD
CCEASDKKTLSPSKGLLSATSLGRRSSFHLECLKRQKNQGLEVPCTTPLSQRTAFPLHLI
QHQALAVAGLNPLLRRSHSPTQFSRVCATPPTTPCSRRRLQHRIPTLFLDGIESYEKLNS
SLPSVNCSSWNSDNSTGNNKKTRPVSLNVPYPFRETGTEFHGSASSLVGAVLISEGLGRY
AQDPKFVAATAHEIADACDMTIEEMENAAGNLLNGKAKGSPNGNLLPFVNCRDYQQQDIV
QDCTEEGQDCEKSDKQFADEMIYVSTL
NT seq
6564 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatgaaaaggaaaggatgtatattcccgaggaaaaccatcaaggcaccaactat
ggtagcagccgaactgtatttgcccatggccttccaaatgccaggacggacggtctggca
ccagagcacatcccaagtcctggagctgccttgtcgtggcaagcagccatcgacgcagcc
agacaagccaaagccgctgcgatgatgggcaacaatatggtctctacggtcaactcaacc
caaaggaaaaggcaacagtatagcaagcagaaaaaacaagctaacgccgcgaccacacgt
ccaccacgggctctcttctgcttgacactcaaaaaccctctgaggcgagcatgtatcaat
attgtcgaatggaagcccttcgaaataattattctgctaactattttcgctaattgtgtg
gccttagccgtctatatacctttcccagaggacgactcgaatgcaaccaattccaatctg
gaacgggtggaatatctctttctcatcattttcacagtggaagcatttttgaaagtaata
gcttatgggcttctgtttcaccctaatgcgtacctcaggaatggctggaatttactagat
ttcattatagtggttgtagggctttttagtgctattttagaacaagcaaccaaagcagag
ggaattaacccaattggaggtaaagctgctggatttgatgtcaaagctctaagagcattc
agagtcctacgaccattacgcctagtgtctggtgttcctagcctccaggtggtgttaaat
tcaatcatcaaggccatggtcccattgctacacattgctttgttggtgctgtttgtaatt
atcatctatgccattataggattagaactctttatgggcaaaatgcacaaaacctgctta
tttaatgaaacagatacagttgctgaagaggaacctgcaccctgtagcttaaatattgga
catggtcgtcgatgttcaaatggcacattgtgtaaaagtggatgggttggccccaatgat
ggaatcactaacttcgataactttgcgtttgctatgttaaccgtatttcagtgcatcacc
atggaggggtggactgatgtcttatactggatgcaggatgccatgggctatgagctaccg
tgggtctattttgtgagtctggtcatctttggatccttctttgttctaaacctggttctt
ggtgtattaagcggagagttttccaaagaaagggagaaggccaaagctcgaggtgatttt
caaaagttaagagagaaacaacagttagaagaagatctcaaaggctacctggactggatt
acccaagctgaagatatagatccagagaatgaagatgaaggaatggatgaagataaacct
agaaatctgagcatgcccactagtgaaactgagtctgtgaatcatgagaatgtggctggg
gcagaattggaagatttgaactgctgcacaaaagttgggcatcgaatttccaagtccaag
ttcagtcgatattggcgaagatggaaccgattttgcagaagaaaatgtagagctggagtg
aaatctagtgtgttttattggcttgtaatatttcttgttttcttgaacaccctcactatt
gcctccgaacactacaaccagcctgaatggcttactctagttcaagacactgcaaacaaa
gtccttttggcacttttcactggcgaaatgctactcaagatgtacagccttggacttcaa
gcttattttgtatcactttttaaccgctttgactgtttcattgtctgtgggggaatcctt
gagactattctagtggagaccaaaattatgtccccacttggtatttcagtgcttcgctgt
gtgcgacttctgagaatatttaaaattacaagatattggaattccttgagtaacttggta
gcttccctcttgaattcagttcgatcaattgcatctttgttgctgctcctgttccttttt
attataattttttcactcttgggaatgcaactttttggaggaaagtttaattttgatgag
atggaaacaaaacggagtacatttgataactttcctcagtcccttctcactgtcttccag
attcttacaggtgaagactggaattcagtgatgtatgatggcataagggcatatggaggg
ccatcattcccaggaatgctggtttgtatttacttcatcatcctattcatctgtgggaac
tatatactattaaatgtattcttggccatcgctgtagacaatctggctgatgctgaaagt
ttgacttctgcccagaaggaggaggaagaagagaaagaacgcagaaagctagcaaggaac
tctagtccagaaaaatcaactgataatgaaaagcaaccaatagatgaggagaagaaattg
gagaaaattgaactaaagacgatcactgcagatggagatgtgcctcctgctacaaagatt
gaattggaagactatcaggttgaggacaatgaggagaagaatccttatcctaccaatgaa
ttcccaggggatgaagatgacgaggaaccagaaatgcctgtaggaccacgtcctcggcca
ctctctgaactgcatataaaagagaaggctgttcccatgcccgatgccagtgcattcttt
gtcttcagtactacaaacagattccgggtactgtgccacaggatcgtcaatgacaacatt
tttacaaatctcatcttgttcttcatcctcatgagtagtatttctttggcagcagaagat
cctgtccaccagaacaccagaagaaatcaagtgcttacctatgcagattatgtcttcact
agtatcttcacagtagagattatattaaagatgaccgcctatggtgcattcattcacaaa
ggctccttctgcaggaattatttcaacatacttgacctggttgtggttagcgtctctctc
atatcgtttggaatggactccagcgcaatagcagtagtaaagattctcagagtgctgcga
gtattaagacctttgagagccattaacagagcaaagggattgaagcacgttgttcaatgt
gtgtttgtggccctgagaaccattggtaatattgtgatagtcaccacattactacagttc
atgtttgcttgtattggtgtgcagctcttcaaggggaaactctacacatgctcagatgga
tccaaacagagagagtttgaatgcaaagggcagtatattttgtacaaagatggagatgta
aatcagccaatgataagagatcgaaaatgggagaatagtgaattcaactttgatgatgtc
ccctctgcaatgatggctctattcactgtctcaacctttgaaggatggccacagttgctt
tatcgagccatcgattctcatacagaggatgcaggtccaatttacaactacagagtggag
atatcaatcttcttcatcatctatatcatcgttattgctttcttcatgatgaatattttt
gtaggttttgtcatcgtcacatttcaggagcagggggaacaggaatacaaaaactgtgaa
ctggataaaaatcagcgtcagtgtgttgaatatgccttgaaggctcggcctcttcggcgg
tatatcccgaagaatacttaccagtataaagtgtggtatgtggtaaattccacctacttc
gaatacctgatgtttgtcttgatcctcctgaatacaatctgcttggctatgcagcactat
ggccaatcacagacatttggtcaagccatggatgtccttaatatgctcttcaccgggctg
ttcacagttgaaatgattttgaagttaattgcattcaagcccagaggttactttagtgat
ccctggaatgtttttgacttcctcatcgtaattggcagcataatagacgtcattctgagt
gagatcaatcactatttttgtgatgcatggaatatatttgacgccttaattgttgtgggt
agcgttgttgatatagctatcacagaggtgaacgtaagtaaccatctcaatgaacatgcc
tgctccacttctgtttgttatacttctattcatatacaattttatgtttgtaatgtcatc
ctttttcctgcccctaagcctgttgcactccacagtttcaaggaggtgatgaaagaatta
ggtgaaataatgggtgctgacagtcagttaatggtattttcactttcattgcaggcactg
ccatacgttgctcttctaattgttatgttgttcttcatctatgctgtgattggaatgcaa
gtgtttggtaagattgccatgattgatgggactcaaatcaacaggaacaacaattttcaa
accttcccacaggctgttctgttgctcttcagatgtgctacaggtgaggcctggcaggag
atcatgttatcttgtctcccaggaagacattgtgaaaaagagccaacgcgtcatgaaaca
gagcttaactgtggaacttattttgctttcttctactttgttagtttctacatgctgtgt
gccttcttgattatcaacctctttgtagctgtaatcatggataattttgattatttaacc
cgtgattggtctattcttggtccacatcatctggatgaatttaagagaatctgggctgag
tacgatcctgaggccaagggtcgcatcaagcacttagatgtggttactctcctgagaagg
atacaaccgcctttgggatttggcaagttgtgtccacatagagtggcctgcaaacgcttg
gtatccatgaatatgcctttaaacagtgatggcacagtcatgttcaatgcaactctcttt
gcattggttcgcactgcattaaggatcaaaactgaaggtaatttggaacaagcaaacgaa
gaacttcgagcaattattaaaaaaatctggaaacgtacaagcatgaaattgttggatcag
gtcgtgccaccagcaggagatgatgaagttactgttggaaaattctatgctacattctta
atccaggattacttcagaaaattcaaaaagcgcaaagaacaaggcattgttgggaaggca
gtgcagaaaaatgcattgtctctacaggcaggtctgcgtaccttacatgacattggccct
gagattcgtcgtgcaatatctggggacctgacagcagaagaagaactggaaaaagcgatg
aaagaggctgcttcagctgcctcagaagatgacattttcaggagggctggtggtttattt
gggaaccatgttggctattatccaagtgattgtagaggttcctttccacaaacgttcact
acacagcgtcctttgcacctcaataaatcaggaacctctcaagttgaagtagaatcacca
tcacatgagaaactggttgattcaaccttcactccaagcagctattcatcatctgggtca
aatgccaatatcaacaatgccaataatactgcaatatccagattcccaattccagtcaac
taccaaagcaccgtcagcacagtggatggtcatagcaattcactgacttcagcacttata
ttgcaaggcacaacatggaggatcaatcccaaaaggactcggtattacgaaacactggta
cgttcagactctgaagatagcagtttgccaattattcagcgagaggaagcatatcctgat
gaaatttatgatgagaacttcaatgaagatcccgattgctgcagtgaagacagcatactt
tcttcacaactgaattcatataaagaacatgatgaaaaacagctcactccaccagtggac
tgctgtgaggcaagtgataaaaagaccctgtctccttcaaaaggacttctttcagcaaca
tcattagggagaagatcatcatttcacctggagtgcctaaagagacagaagaatcagggc
ttggaagttccttgcacaactccactctctcagaggacagcattcccactacatttaatt
cagcaccaggcattggctgttgcaggactaaatccactgctgaggagaagccattctcca
acacaattttccagagtgtgcgccacacctccaacaactccatgtagtagaaggagattg
caacatcgtattccaacattatttcttgatggcattgaatcctacgagaaactaaacagc
agccttccatcagtaaactgtagctcatggaactctgacaactcaactggaaataacaaa
aaaaccaggccagtctctctgaatgtaccttatcctttcagggaaaccggaacagagttt
catggcagtgctagtagtttagtaggggcggtcctgatctcggaagggcttggtcgatat
gcacaagatccaaaatttgttgctgcaacagcccatgaaattgcagatgcttgcgatatg
acaatcgaggagatggaaaatgcagcaggcaatttacttaatggcaaagctaagggtagc
ccaaatggtaatctgttaccctttgtgaactgcagagactaccagcaacaggatattgtg
caagattgcacagaagaagggcaggactgtgaaaaaagtgataagcaatttgcagacgag
atgatttatgtaagcaccctgtag
DBGET
integrated database retrieval system
