KEGG   Chiloscyllium plagiosum (whitespotted bambooshark): 122561666
Entry
122561666         CDS       T08871                                 
Symbol
apaf1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
  KO
K02084  apoptotic protease-activating factor
Organism
cpla  Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla04115  p53 signaling pathway
cpla04210  Apoptosis
cpla05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:cpla00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    122561666 (apaf1)
   04115 p53 signaling pathway
    122561666 (apaf1)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    122561666 (apaf1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_IFT122_1st Beta-prop_THOC3 WD40 WD40_WDHD1_1st WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz APAF1_C Beta-prop_WDR3_2nd WDR55 Beta-prop_WDR36-Utp21_2nd EIF3I WHD_APAF1 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 WD40_Gbeta WD40_MABP1-WDR62_2nd NB-ARC Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st ANAPC4_WD40 Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th CARD Beta-prop_TEP1_C Beta-prop_IFT140_1st DSE1_N Beta-prop_NOL10_N Beta-prop_WDR41 Beta-prop_RIG_2nd CFAP251_N Beta-prop_NWD2_C Beta-prop_Aladin Beta-prop_HPS5 RMC1_N WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st ASA1 Beta-prop_Vps41 TRM82_WD Beta-prop_WDR35_TULP_N CARD_2 Ge1_WD40 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_Nup120_160 PAC11 WDR54 Beta-prop_WDR75_2nd Tricorn_2nd AAA_22 ATPase_2 AAA_16 nSTAND6 DUF3173 AAA_18
Other DBs
NCBI-GeneID: 122561666
NCBI-ProteinID: XP_043569557
LinkDB
Position
23:18177908..18363085
AA seq 1290 aa
MDERTRSCLLQNRSALEQDIKTSYIMDHLISEEVLSLEDEQKVKAQFTQKERAALLINLI
LQKDNCAVISFYNALLNEGYKELAALLQDGLPIVSNSPNKTSIDGPTAYVQTILCEGGVP
QRPVVFVDRPELVLTIRNVLYKLENDPGWITIYGMAGCGKSVLAAESLRNHKVITTCFPG
GVHWVAVGKQDRAGILVKLQNLCSRLNQESNTYPSPPLNIEEARDRLRFLMARKYPRSLL
VLDDVWDSWVLKCFDVQCRVLITSRDKSIADVVTGNNFSVSVQSGLTNDKGLEVLARFVN
LEVSSLPEEAHSIVQECKGSPLVVSLIGALLREFPKRWKYYLSQLQNKQFKRIRKSSSYD
YEALDEAMAGSIEVLDDYKEYYKDLSILRKDVKVPSKVLSILWALETEEVEDILQVFVNK
SLLFCDRNGKSFHYYLHDLQLDFLTEQYRNQLPDLHAKMVQQYHKIYKGQFPSPSDEDCM
YWYSFLPNHMAEANMDKELYSLMFSVDWIKAKSELMGPAQLINDFVEYRHILDKENSIVR
ENFQEFLSLKGHLLVQKPFPDIVQLGLCQPDSSEVYRQAKLQAVERAKKGAVYLDWMNKK
TLQNLSRLVVRPHSDAVFHACFSHDGLKIASCGADKTLQVFKSETGEKLLEVLGHDDEVL
CCAFSPDDKFIATCSSDTKVKVWNLLTGELYHTYHEHSEQINYCCFSRSPNRILLATCSN
DTYLKTWDLKGTNCRNTLFGHTDYVNHCRFSPDDQYLASCSNDGTVKLWDTSSANQWKSF
DVREQFQKPDAADYDDEEVEMLLKCCTWSSDGTQIMAAAKNVIFVFDVLTGDIITELITS
SSYTIQSCDVSLTSPLLAVALSHNSVELWNLDLRKRVADCSGHLSWVHCVQFSSDGSTLL
SSSDDQTVRLWNTNKVHSASAVSLFRDMDAVFHEDEVFVLVSDKKKCLQLINGKTGDVMC
QSEVQNSHIHCCCLNHQVNLAAVGCGDGILKGGMKSAKFILQSIGWKRQHFQQSLLVAVG
LENGTLKVLELPSGKLHKTLTGHMACVQQCQFTSEGMMLISCSDDCTIRVWNWRTEDCKV
LTGHTEQVKNFKLLKEPQLLSWSFDGTVKVWDYNSGKLLKNYSCHMGAAVLSCDASPNGS
RIASASADKSAKILSLNSTIPLHSLTGHNACVRSCKFTWDNDCLATGDDNGEIRIWRVHD
GSLLHICSEESEIKDSKHGGWVTDLHFSPDSKTLVSTGGYIKWWDMKTGESLQTFYTNGT
NLKSIYVSSDFKTYVTIDSIGILYILKMIN
NT seq 3873 nt   +upstreamnt  +downstreamnt
atggatgaacgaacgcgcagttgtttattacaaaatcgctctgcacttgagcaagatatc
aagacctcatatattatggatcacctcataagtgaagaggttctgagtcttgaggatgaa
cagaaagttaaagctcagtttacacagaaagaacgagctgctttacttataaacctaatc
cttcaaaaggataattgtgctgtcatatctttctacaatgcgttgctgaatgaagggtac
aaagaacttgctgcgcttcttcaagatggccttccaattgtctctaattctccaaataaa
acatctatagatggcccaactgcttatgttcaaactatactttgtgaaggtggtgtacca
caacgccctgttgtgtttgttgatcgtccagaacttgtgctaactatccgaaatgtactc
tacaaactggaaaacgatcctgggtggattactatatatgggatggcaggttgtggaaag
tcagtattagcagctgaatccctaaggaatcacaaagttataaccacatgtttccctgga
ggagtacactgggtagcagttggaaagcaagaccgtgcaggtatccttgttaaactgcag
aatctctgcagtcgacttaaccaggagtccaatacttacccaagtccacctcttaatatt
gaggaagctagggaccgactccggttcttaatggcacgcaaataccccaggtcccttttg
gttctggatgacgtttgggacagctgggtgctaaagtgttttgatgttcaatgtcgtgtt
ctaatcaccagcagagacaagagcatcgctgatgtagttacaggtaataacttttctgtt
tctgtgcaaagtggtctgacgaatgacaagggactagaagtactagcacgttttgtgaac
ttagaggtatcctctctgccagaagaagcacatagcattgtacaggaatgcaagggttct
cctcttgttgtctccctcattggtgcactgttgcgagaatttccaaagcgctggaaatat
tatctcagccagctacaaaataaacagttcaaaagaattcgcaaatcttcctcctatgat
tatgaagcacttgatgaggccatggcaggcagcattgaggtgttggacgattataaagaa
tactacaaggatctctctatacttagaaaagacgtgaaagtcccatctaaggttctgagt
attctgtgggcattagaaacagaagaagtggaagacatcctacaagtatttgtcaacaaa
tcgttactattctgtgaccgcaatgggaaatcttttcattattacctgcatgatttacag
ttggatttcctgactgaacaatatcgcaatcagcttccggacttgcatgcaaaaatggtt
cagcaatatcacaagatatataaagggcaatttccatcaccttctgatgaagattgtatg
tattggtacagttttctaccaaatcatatggctgaagcgaatatggacaaggaactctat
tcactcatgttttcagtggattggataaaggccaaatctgaactgatgggcccagcccag
ttgataaatgactttgtggaatataggcatatactcgataaagagaacagtatagtacgg
gaaaattttcaagaattcttgtctttgaaaggccatcttcttgtgcagaaaccctttcca
gatattgtgcaattgggcctttgtcaacctgattcttctgaagtgtaccggcaagcaaaa
ctgcaggctgtggaacgagccaaaaaaggggctgtatacctggattggatgaacaagaag
accttgcagaacttgtctcgccttgttgttcgacctcatagtgatgctgtttttcacgcc
tgtttttctcatgatgggttgaagatagcatcttgtggagcagataaaactttgcaggtt
tttaaaagtgaaactggtgagaaacttttggaagtccttggacatgatgatgaagttctt
tgttgtgcattttctccagacgacaagtttatagccacgtgctcctcagatacaaaagtt
aaggtttggaatttattaactggggagttgtatcatacataccatgaacatagtgaacaa
atcaactattgttgtttttcacgttcaccaaataggattcttttggcaacctgctccaat
gacacctatttgaaaacatgggacttgaaagggacaaactgtaggaacactttgtttggc
cacacagattatgttaaccattgcagattttcacctgatgatcaatatctcgcaagttgc
tccaatgatgggacagtgaagctatgggatacctcctctgctaatcagtggaagagcttt
gatgtacgtgagcagttccagaaaccagatgctgctgactatgatgatgaagaggttgag
atgctattaaagtgctgcacatggtcatctgatggcactcaaatcatggcagctgcaaaa
aatgttatctttgttttcgatgtattgactggtgacattataactgaactaataacaagt
agctcttacacgattcagtcttgtgatgtttctcttaccagtccattactggcagtggcc
ttgtcacataactctgtcgagctatggaacttggatttgcgtaagagagtagctgactgc
agtgggcatttgagctgggttcattgtgtccaattttcatcagatggctcaactttactt
tcatcttcagatgaccaaactgtgagactatggaataccaataaagtgcatagtgcctct
gctgtgtccttgtttcgagatatggatgcggtcttccacgaggatgaagtctttgtttta
gtatctgataagaaaaaatgtttacagctaataaacgggaaaactggtgatgtaatgtgt
cagagtgaggtccagaactcgcatattcattgttgctgccttaatcatcaggttaattta
gctgcagtcggatgtggagatggaatcttaaagggaggcatgaagtcggccaagttcatc
ctgcagagcattgggtggaagagacagcacttccagcagagcctgttggtagcagtaggg
ctagaaaatggcacactaaaggttctggagcttcctagtggtaaacttcacaaaacatta
acaggtcacatggcatgtgtccaacaatgtcagtttacatctgaaggtatgatgctgatt
tcctgttcggatgactgcacaataagggtatggaattggcgcacagaagattgcaaagtc
ctcacagggcacactgaacaagtgaaaaacttcaagctgttgaaagagccacaacttctg
tcctggtcctttgatgggactgtgaaggtatgggattacaactccggtaaattgctgaag
aactatagctgtcatatgggagcagcagttctgtcatgtgatgcatcacccaatggcagt
agaattgcttctgcttctgctgataaaagtgcaaagattttgagcctgaacagcaccatt
cctcttcacagtctgactggtcataatgcctgtgtccggagctgcaagttcacatgggat
aatgattgtttggctacaggagatgacaatggtgaaatcaggatctggagggtgcacgat
ggttctttgcttcatatttgttcagaagaatcggagatcaaagattccaaacatgggggt
tgggttacagatcttcacttctcccctgacagtaagacattggtctcaactggaggttac
ataaagtggtgggatatgaaaactggagaatctctgcagacattctatactaatgggaca
aacctgaagtccatatatgtttcatctgacttcaagacctatgtaactattgatagtatt
ggaatactctacatcttgaaaatgataaactga

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