KEGG   Chiloscyllium plagiosum (whitespotted bambooshark): 122564292
Entry
122564292         CDS       T08871                                 
Name
(RefSeq) small nuclear ribonucleoprotein-associated protein B'-like isoform X1
  KO
K11086  small nuclear ribonucleoprotein B and B'
Organism
cpla  Chiloscyllium plagiosum (whitespotted bambooshark)
Pathway
cpla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cpla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    122564292
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cpla03019]
    122564292
   03041 Spliceosome [BR:cpla03041]
    122564292
   03032 DNA replication proteins [BR:cpla03032]
    122564292
Messenger RNA biogenesis [BR:cpla03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    U7-dependent histone pre-mRNA processing factors
     122564292
Spliceosome [BR:cpla03041]
 Complex A
  U1 snRNP components
   Sm proteins
    122564292
  U2 snRNP components
    122564292
 Complex B
  U1 snRNP components
    122564292
  U4/U6.U5 tri-snRNP components
    122564292
 Complex C
  U2 snRNP components
    122564292
DNA replication proteins [BR:cpla03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Telomerase complex (fungi)
    Sm core complex
     122564292
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 122564292
NCBI-ProteinID: XP_043574900
LinkDB
Position
29:complement(23616336..23629935)
AA seq 230 aa
MPIGRSAKMVQYVDYRMRCVLQDGRVFIGILKAFDRHMNLILCDCDEFRRLKSKSSKQGE
REEKRALGLVLLRGETLVTMTVEGPPVRDIGISRVPIGGPGVGRAAGRGMPASIPMAQVP
AGLMGPIRGVGGPSQQEMTPQTRGTGIVPTPSFSAVPQSYAPVRGAPPVLGEPRPGFMRP
PPGMRLPFAPPPIGMPSGRGAPMGIPPGMRPPMMPRMRGPPGSRAHPPKP
NT seq 693 nt   +upstreamnt  +downstreamnt
atgccaataggaagaagtgctaaaatggtacaatatgtggattacaggatgcgatgtgtg
ctccaagatggccgtgttttcattggcattctcaaagcttttgaccgacacatgaacctc
attctctgtgactgtgatgaattcagaaggttgaagtcaaagagctccaagcaaggtgag
agagaagaaaaacgagcccttggtcttgtgttgcttcgaggggaaacccttgtgacgatg
actgtggaagggcctcctgtgagagatattggcatttcgagagttcctattggtggtcct
ggtgttggtagagcagcagggagagggatgccagctagcataccaatggctcaggtacct
gcaggactaatggggcccataagaggtgttggaggtccttcacagcaggaaatgacccct
cagactagaggaactggaatcgtgcccactcctagcttttctgctgtcccacaatcttat
gcaccagtgagaggtgctccgccagttcttggtgagccaaggccaggctttatgagacca
cctcctggcatgagacttccatttgcaccaccaccgattgggatgccttcaggcagagga
gctccaatgggaattcctccaggaatgcgaccaccaatgatgccaaggatgagaggtcct
ccaggatctagagcacatcctccaaaaccttag

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