Coprothermobacter proteolyticus: COPRO5265_0132
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Entry
COPRO5265_0132 CDS
T00773
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpo
Coprothermobacter proteolyticus
Pathway
cpo03030
DNA replication
cpo03410
Base excision repair
cpo03420
Nucleotide excision repair
cpo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
COPRO5265_0132 (ligA)
03410 Base excision repair
COPRO5265_0132 (ligA)
03420 Nucleotide excision repair
COPRO5265_0132 (ligA)
03430 Mismatch repair
COPRO5265_0132 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpo03032
]
COPRO5265_0132 (ligA)
03400 DNA repair and recombination proteins [BR:
cpo03400
]
COPRO5265_0132 (ligA)
Enzymes [BR:
cpo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
COPRO5265_0132 (ligA)
DNA replication proteins [BR:
cpo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
COPRO5265_0132 (ligA)
DNA repair and recombination proteins [BR:
cpo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
COPRO5265_0132 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
COPRO5265_0132 (ligA)
MMR (mismatch excision repair)
DNA ligase
COPRO5265_0132 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
COPRO5265_0132 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
HHH
5_3_exonuc
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
UPF0758_N
RUBY_RBDX
GFRP
Motif
Other DBs
NCBI-ProteinID:
ACI17456
UniProt:
B5Y6V5
LinkDB
All DBs
Position
complement(130750..132750)
Genome browser
AA seq
666 aa
AA seq
DB search
MTREEAKKRIERLRELIEYHNYRYYVLDSPEISDEEYDKLYRELVTLEKQFPEFITPDSP
TQRVGAPPAKEFATVTHEVPMLSLDNAFTEDEIKAFDQRVRSALNQQHVEYFCEHKLDGL
AVSLLYENGLFVRGSTRGNGYVGEDVTANLKTIKTIPLRLKGENIPPVVEIRGEAFMMLR
DFEALNEQRQALGQPLFANPRNAAAGSIRQLDSSITAQRKLYFMPYGFGLVQGMDFETQE
RFLKQCQEWGFRINEHNRKASSIEEALEFIRYWTEHRVELPFPADGVVIKVNNLRYWDIL
GTTAHAPRYAIAYKFPAEEKETKLKDVVFQVGRTGIITPVAMLEPVVLDGATVSRATLHN
FDIVRQLDVRKGDVVKLKRAGMVIPEIIGVAAEKRTGKEEQIEPPTTCPVCGGPTEWDGA
YLKCVNITCPAQLKGHLLHWASRDAMDIDGLGESIIENLVDMGLVKNIADLYKLSVQDLL
TLPRLAQRSATKLYENIQRSKDRPFFRVLYGLGIPRVGLKTAQMLAEHFGSINALLNATM
DELTSIEGIGTDTAETILKALQSPQVHELIDQLKTLGLKMEQESIEGPLKGLTFVFTGTL
TSMSRGDAAKLVQSLGGKVASSVSKNVDYVVVGEDPGSKLDKAQKLGLTIIDEEAFLKMV
KREHNG
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgacgcgggaagaagcgaagaagagaatagaacggttaagagaacttattgagtaccac
aactaccgttattacgtactggatagccctgaaatcagcgatgaagaatacgacaaactt
taccgtgaactggtgacactagaaaaacaatttccagagtttattacacccgatagcccc
actcagcgcgtaggtgctcctccggccaaggaattcgccactgtaacccatgaagtcccc
atgctttccttggacaatgccttcacagaagatgaaataaaggcttttgatcagcgtgtt
cggagcgcactgaaccagcaacatgtagagtatttttgtgagcacaaattagacggcttg
gctgtgagccttttgtatgaaaatggcctctttgtcagaggtagtacccgtggcaacggt
tatgtgggtgaggacgttacggcgaacttgaaaaccataaaaaccattccattaaggtta
aaaggtgaaaacattccacccgtagtagaaattcgcggcgaggctttcatgatgctaagg
gattttgaagcgcttaacgaacaaaggcaagctttaggacaacctttgtttgccaaccca
aggaatgcagcagctggttcaatcagacagctcgattcatccataactgcccagcgcaaa
ctgtacttcatgccttatggttttggtctggtccagggcatggattttgaaacccaagag
cgcttcctcaagcagtgccaggaatggggattcagaataaatgaacacaacaggaaagca
tcttctattgaagaggcattagagtttatccgctattggactgaacacagggttgaactt
ccgtttcctgctgatggggttgtcataaaagtgaataacctaaggtactgggatattttg
ggcaccacagctcatgctccgcgttacgccattgcctacaagtttccagccgaggaaaag
gaaactaagctaaaggacgtcgttttccaggtaggtagaactggcatcataacacctgtg
gctatgcttgaaccagtggttttggacggagctactgtaagcagagccacacttcacaac
ttcgacatagtaagacagttggacgtaagaaaaggtgacgtagtgaaactcaaacgtgct
ggcatggtcataccagaaatcataggcgtcgccgcagaaaagagaacgggtaaggaagag
caaattgagcctcctactacttgccccgtctgtggaggccccacagaatgggacggagca
tatctaaaatgtgtaaacattacgtgtcctgctcagctaaaaggacacctgcttcactgg
gcttcccgtgatgccatggacatcgatggattgggagaaagcattattgagaacctcgtt
gacatggggctagtcaaaaacattgctgatttgtacaagctgagcgtacaggatttactc
acgctgcctcgattggctcagcgctctgccacaaagctttatgagaatatacagcgatcc
aaagacagaccgttttttagagtgctttatggtttgggcataccgcgtgttggactaaag
acagcacaaatgcttgcggaacattttggttccataaatgccctactaaatgcaaccatg
gatgagcttacaagcattgaagggatcggcacagataccgcagaaaccatcttaaaagca
ctgcagagccctcaggttcatgagctcatcgaccagctcaaaactttgggactaaaaatg
gagcaagaatcaatagaagggcctcttaagggactcaccttcgtgtttaccggaacatta
acaagcatgagccgaggggacgcagctaaattggttcagtcattgggcggcaaagtagct
tccagcgtatcgaaaaacgtggattacgtggtcgtaggtgaagacccgggttcaaaactg
gataaggcacagaaattgggtttgactataatcgatgaagaggcatttttgaaaatggtg
aaaagagaacataatggttaa
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