Chitinophaga pollutisoli: WJU16_11415
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Entry
WJU16_11415 CDS
T10245
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpol Chitinophaga pollutisoli
Pathway
cpol03030
DNA replication
cpol03410
Base excision repair
cpol03420
Nucleotide excision repair
cpol03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
WJU16_11415 (ligA)
03410 Base excision repair
WJU16_11415 (ligA)
03420 Nucleotide excision repair
WJU16_11415 (ligA)
03430 Mismatch repair
WJU16_11415 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpol03032
]
WJU16_11415 (ligA)
03400 DNA repair and recombination proteins [BR:
cpol03400
]
WJU16_11415 (ligA)
Enzymes [BR:
cpol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
WJU16_11415 (ligA)
DNA replication proteins [BR:
cpol03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
WJU16_11415 (ligA)
DNA repair and recombination proteins [BR:
cpol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
WJU16_11415 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
WJU16_11415 (ligA)
MMR (mismatch excision repair)
DNA ligase
WJU16_11415 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
WJU16_11415 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
PSF1_C
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
WZN43635
UniProt:
A0ABZ2YUW5
LinkDB
All DBs
Position
2798199..2800289
Genome browser
AA seq
696 aa
AA seq
DB search
MYAKDIEISLAQEAKALLSGKTGTPQELADALRQVIRHSDWRYYVQDDPVLSDQEYDALF
AQLKRLEMEHPELQAPDSPTQRVAAGLTKNFPTVQHLVPMLSLENSYNADDLRDWDRKNR
EASGLSEIEYCVEPKFDGASISLIYENDLLVRGATRGDGVQGDEITVNIRQIRSIPLSAN
FARFGIQQIELRGEVLINKKTFARLNEQRAAENLPPLANPRNAASGSLRIVDPAEVAKRG
LEAFLYHMSFHTMNDGMEEPPAIRTHSNTLDMLWQLGFRSPAKEMKAVKGIDAVIAYCEQ
FEAHRDDLPYEIDGMVIKVNDYQLQDKLGMTTHHPRWAMAFKFKARQATSILRDVEFQVG
RTGSITPVAKIDPVPIGGVTVASVSLFNEDVIREKDLKIGDRVLVERAGDVIPYIVKSVA
DLRDGTEKDIVFPKECPVCKDPLFKPEGESVWRCVNINCEAQVVERMIHFVSKDAMDIRS
LGESNVRKFWGLQLLRDVPGIYTLDFEAVGKLEGFGPKSVSNLRTAIEASRAQPLHRLIF
GLGIRYVGETTAKTLANAVSHLLDLKDYTEEQLLALEDIGPKVAGSVRQFFLNEDNIHML
RKLESLGLNLQSSRGSRSEEGTLSGQTFLFTGTLHKLKRSDAEALVEAQGGKILSGVSSK
LNYLIVGDDAGSKLEKAKKINTVKILTEDEFIKMLE
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgtacgccaaagacattgaaatttcgctcgcccaagaggcgaaagcgcttctgtccggt
aaaacgggcactccgcaggaactggccgatgcgttgcggcaggtgatccgccatagcgac
tggcggtattacgtgcaggacgaccccgtgctgagcgaccaggagtatgacgcgctgttt
gcacagctgaagcggctggaaatggagcacccggagctgcaagcccctgattcccctacg
cagcgcgtggcggcggggcttacgaaaaacttccccacggtgcagcacctcgttcccatg
ctgagcctcgagaactcttacaacgccgacgaccttcgcgattgggaccgcaagaaccgc
gaggcttccgggctgagcgagatcgaatattgcgtggaacctaagtttgacggggccagc
atttcgctgatttatgaaaatgatctgctggtgcgaggcgccacgcgtggtgatggcgtg
cagggcgatgagatcacggttaacatccggcagatccgttccatcccgctgtcggccaac
tttgcccggttcggcatccagcagatcgagctgcggggcgaagtgctcatcaataaaaaa
actttcgcacggctgaacgaacaacgcgccgccgaaaacctcccgccgctggccaacccg
cgcaacgccgcttccggctcactgcgcatcgtggaccccgcggaagtggcgaaacgcggc
ctggaagcgttcctctatcatatgagcttccatacgatgaacgacgggatggaagaaccg
cctgcgatccggacgcacagcaatacgctggatatgctctggcaactcgggttccgcagt
cccgcgaaggaaatgaaagccgtaaagggcatcgacgccgtgatcgcttactgtgagcag
ttcgaagcccaccgcgacgatcttccttacgagatcgacggcatggtgatcaaagtgaac
gattaccagttgcaggacaagctcggcatgacgacgcaccacccgcgctgggcgatggcc
ttcaagttcaaggcgcgccaggctaccagcattctccgcgacgtggaattccaggtgggc
agaacgggttctattacccctgtggccaagatcgatccggtgcccattggcggcgtaacc
gtagcgtccgtgagtttgttcaatgaagacgtgatccgggaaaaggacttaaaaatcggc
gaccgggtgctggtggaaagagcgggcgatgtgatcccttacattgtaaaatccgtagcc
gacctccgcgacggcacggagaaagatattgtttttccgaaggaatgccccgtctgcaaa
gatcctttgttcaagccggaaggcgaaagcgtctggcgttgcgtgaacatcaactgcgag
gcgcaggtggtggaaaggatgatccatttcgtgagtaaagacgcgatggacatccgcagc
ctgggcgaaagcaatgtccgcaagttctggggccttcaattgctgcgcgacgtgccgggc
atctacacgctcgatttcgaagcggtgggcaagctggaaggcttcgggccgaagtcggta
tccaacctccgaacggccatcgaggcgtcgcgggcgcagccgttgcaccggctgatcttt
gggctgggaatccggtatgtgggagaaaccacggccaaaaccctggccaacgcggtgtcg
cacctgctcgacctgaaggattatacggaagagcagctcctggcgctggaagacatcggt
ccgaaagtagcgggcagcgtccggcagtttttcctgaacgaggataacatccatatgctg
cgaaagctcgaatcgctgggcctgaacctgcaaagcagccgcgggtcgcggtcggaagaa
ggtaccctcagcgggcaaaccttcctgtttaccggtacgctccataaattgaaaagaagc
gacgccgaggcgctggtggaagcgcagggcggcaagatcctcagcggggtgagcagcaag
ctcaactacctgatcgtgggcgacgacgccggcagcaaactggagaaagcgaaaaaaatc
aataccgttaaaattctgacggaagacgaattcatcaaaatgctggaataa
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