Citrobacter portucalensis: FOB25_18380
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Entry
FOB25_18380 CDS
T06238
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpot
Citrobacter portucalensis
Pathway
cpot03030
DNA replication
cpot03410
Base excision repair
cpot03420
Nucleotide excision repair
cpot03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpot00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FOB25_18380 (ligA)
03410 Base excision repair
FOB25_18380 (ligA)
03420 Nucleotide excision repair
FOB25_18380 (ligA)
03430 Mismatch repair
FOB25_18380 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpot03032
]
FOB25_18380 (ligA)
03400 DNA repair and recombination proteins [BR:
cpot03400
]
FOB25_18380 (ligA)
Enzymes [BR:
cpot01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FOB25_18380 (ligA)
DNA replication proteins [BR:
cpot03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FOB25_18380 (ligA)
DNA repair and recombination proteins [BR:
cpot03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FOB25_18380 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FOB25_18380 (ligA)
MMR (mismatch excision repair)
DNA ligase
FOB25_18380 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FOB25_18380 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
5_3_exonuc
Prok-E2_C
Motif
Other DBs
NCBI-ProteinID:
QET58275
LinkDB
All DBs
Position
3879310..3881325
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSTDKLTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLRGDNIPTRLEVRGEVFLPQAG
FEKINEEARRTGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGVLPDTHL
GRLLQFKEWGLPVSDRVTLCDSPEEVLAYYHKVEEDRPTLGFDIDGVVIKVNSMVLQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPDDTREIEFPTHCPVCNSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRALDVDGMGDKIIDQLVEKEYVHTPADLFTLTAG
KLTGLDRMGPKSAQKVVNALEKAKETTFARFLYALGIREVGEATAAGLAAHFGTLEALEA
ASIEELQKVPDVGIVVATHVFNFFAEESNREVIVQLLAQGIHWPAPVVINAEEIDSPFAG
KTVVLTGSLSLMSRDDAKARLTELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEAEMIRLLGA
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaaccacgcttcgccatcatgagtat
ctctaccatgtgatggatgcgccggaaattcccgatgcggaatatgatcgcctgatgcgt
gaactgcgcgagctggaagcgcagcatccggaacttatcacccccgactcgccaacccaa
cgtgttggcgccgccccgttagcagcgttcagccagattcgccatgaagtgccaatgctg
tcgctggataacgtgtttgatgaagagagttttctcgccttcaacaagcgcgtgcaggac
agactaaagagtacggataaactaacctggtgctgcgaactgaagctggacgggctggcg
gtcagtatcctgtatgaaaacggtgtgctggtcagtgccgcaacgcgtggtgatggtact
acgggtgaggatattacctcgaacgtgcgcaccatccgtgcgatcccgttaaaactgcga
ggcgataacattccgacgcgtctggaagtgcgcggtgaagtgttcctgccgcaggccgga
tttgaaaaaattaacgaagaggcccgccgcactggcaacaaagtgtttgctaacccgcgt
aacgcagcggccgggtcattgcgccagctcgatccgcgtatcacagcgaagcgaccgctt
actttcttctgctatggcgttggtgtgctggaaggtggtgtgctgcctgatacccacctg
ggccgtctgctgcaatttaaagagtggggattgccggtgagcgacagagttacgctttgc
gactctccggaggaagtacttgcttactatcacaaggttgaagaagaccgaccgacgctg
ggattcgatatcgacggtgtggtgatcaaagtcaactctatggtgttgcaggaacaactg
ggttttgttgcccgcgcgccgcgctgggcggtggcctttaagttcccggcgcaagagcag
atgaccttcgtacgtgatgttgagtttcaggttggacgtaccggggcgattacacctgtc
gcccgccttgagccagttcaggttgccggggtgttggtcagtaacgccaccttgcacaat
gcggatgaaattgagcgtcttggtttgcgtattggcgataaagtcgtcattcgccgtgcg
ggcgatgtcatcccgcaggtagtgaatgtcgtgctttccgagcgcccggacgatacgcgt
gaaattgagtttcccacacactgtccggtatgcaactcagacgttgagcgtgtggaaggc
gaagcggttactcgctgtactggtggtttaatctgcggagcgcagcgtaaggaatcgctg
aaacacttcgtttcccgccgtgcgctggacgttgacggcatgggcgacaaaattatcgat
caactggtcgagaaggagtatgtccacacaccagcggatctcttcacactgaccgcaggt
aagctgaccggtcttgatcgtatggggccgaaatcggctcaaaaagtggtgaatgcgctg
gaaaaagcaaaagaaacgacgtttgcccgtttcctctacgcgctgggtattcgcgaagtc
ggcgaagctacggcggctggtctggcggcgcattttggcacccttgaggcgctggaagcg
gcctctattgaagagctgcaaaaagtgccggatgtcggcattgtggtagcgacccacgtg
tttaatttctttgctgaagagagtaaccgcgaggtgatcgtccaactgctggcgcagggg
attcactggccagcgccggtggtcatcaacgctgaagaaatcgacagccccttcgcgggg
aaaacggtggtgctaaccgggagcctgagcctgatgtcacgcgatgacgccaaagcgcga
ctgactgagttgggtgcaaaagtggccggcagcgtatcgaagaaaaccgacctggtgatt
gccggtgaagcggcgggttcgaagctggcaaaagcgcaggaactgggtattgccgtgatc
gatgaagctgaaatgatccgcttactgggtgcctga
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integrated database retrieval system
