Corynebacterium poyangense: GP475_05040
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Entry
GP475_05040 CDS
T08294
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpoy
Corynebacterium poyangense
Pathway
cpoy03030
DNA replication
cpoy03410
Base excision repair
cpoy03420
Nucleotide excision repair
cpoy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpoy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GP475_05040 (ligA)
03410 Base excision repair
GP475_05040 (ligA)
03420 Nucleotide excision repair
GP475_05040 (ligA)
03430 Mismatch repair
GP475_05040 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpoy03032
]
GP475_05040 (ligA)
03400 DNA repair and recombination proteins [BR:
cpoy03400
]
GP475_05040 (ligA)
Enzymes [BR:
cpoy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GP475_05040 (ligA)
DNA replication proteins [BR:
cpoy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GP475_05040 (ligA)
DNA repair and recombination proteins [BR:
cpoy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GP475_05040 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GP475_05040 (ligA)
MMR (mismatch excision repair)
DNA ligase
GP475_05040 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GP475_05040 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
GpP-like_1st
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QNQ90080
UniProt:
A0A7H0SNF5
LinkDB
All DBs
Position
1069835..1071916
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AA seq
693 aa
AA seq
DB search
MSGVEDRISRVSQEQKDTDLRREWDHLAAEVRRHRDLYYNQEPEISDAEFDALFLGLQQL
EESHPELAVPDSPTAEIGAPARAGSSFANVEHPSAMLSLDNVFDEAELRDWLAKVPAQRY
VTELKIDGLSINLIYREGKLVQAATRGDGHVGEDITENARVIEDIPHRLSVDSPFPVPEL
LEVRGEVFIAVEDFSAVNELRQKAGGKPFANPRNAAAGSLRQKDTAAVKARRLRMICHGL
GASEGFSPEEQEDVYQALVSWGLPVSPYNQVVDSADAVIERVRYWADHRHDALHEMDGVV
IKVDSRAAQRTLGNTSRAPRWAVAFKYPPEEVRTTLLDIQVGVGRTGRITPFAVMKPVQV
AGSLVEKATLHNQTEVRRKGVLIGDEVVIRKAGEVIPEVLGPVADKRDGSERPFVFPTLC
PSCGTRLAPQKAGDADWRCPNTRSCPAQLSSRLESLAGRGVFDIEALGSKGALDLIRRGI
LKDESELFDLTEDDLSSSSVYTTSRGGINAAGKKLLDHLRKAKTTDLWRVLVALSIRHVG
PTAARALAQRYGSMSAIREATVADMAETEGVGETIAKSIAEWFEVEWHQELVRRWEHAGV
TMTEDRTGAPAQVLEGITVVVTGSLDDFSRDSAKEAIISRGGKAAGSVSKKTDFVVVGAN
AGAKETKARDLGIRILREERFHILLDQGPAGLD
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgtccggggtggaggatagaatcagccgcgtgagtcaagaacaaaaagacactgatctt
cggcgtgagtgggaccatctggcggcagaggttcgacggcatcgtgacctgtactataac
caggaaccagagattagtgacgccgagttcgacgcgttatttttagggcttcaacagtta
gaagaatcccatccggaattagcggttcccgatagcccaaccgcggagattggtgctccc
gctcgcgctgggtcgagtttcgcgaacgttgagcacccgtctgcgatgcttagtctcgat
aatgtttttgatgaagctgagttgcgggactggcttgcgaaagtgccggctcagcgctac
gttaccgagctaaaaattgatggtctctccatcaacttgatctatcgcgaaggcaagctg
gttcaggcagcaaccaggggtgatggtcatgttggggaggacatcaccgaaaatgcacgg
gtcattgaggacattccgcatcgattatccgttgattctcctttccccgtcccggagctt
cttgaggtccgcggcgaggtgtttattgccgtcgaagatttctcggcagtcaatgaatta
aggcaaaaggcggggggaaagccgtttgctaatcctcgtaacgcagccgccggatcattg
cgtcaaaaagataccgcggcagtgaaagcgcgtcgcctcagaatgatctgccacggactc
ggcgccagtgaagggttttctccggaggaacaagaggatgtgtaccaggccttagtatcc
tggggtttgccagtatccccctacaaccaggtggttgatagcgccgacgcagtcatcgag
cgagtccgttattgggcggatcaccgccatgacgcactccacgaaatggatggagttgtc
atcaaggtggattctcgcgctgcgcaacgaacactaggaaacaccagtcgtgcacctcga
tgggcggtggcttttaaatatccccccgaggaagtgcgaactaccttgttagacattcag
gtgggggtgggaagaaccgggcgtattactccctttgctgtgatgaagccggttcaggta
gctggctcattggtggaaaaagcgacacttcataatcagacggaggttcgacgcaagggg
gtgctgattggtgatgaagtagttatccgaaaagcaggtgaggttattcctgaggttctt
ggcccagtggcggataaacgtgatgggtctgagcggcctttcgtctttcccacactgtgc
ccttcgtgcgggactcggcttgcccctcaaaaggcgggggatgcggattggcgttgccct
aatacccgttcttgtccggcgcagttatcaagccgcttggaatcactagctggtcgaggg
gtttttgacattgaagccctaggcagcaaaggagctctggacttaatccgacgcggaatc
cttaaggatgaatctgagctttttgaccttactgaagatgatctctcgagctcatcggtc
tacaccaccagccggggagggataaacgctgctggtaagaaactgcttgaccacctaagg
aaagcaaagacgaccgacttatggcgagttctcgtagctctttctattcggcatgttggt
ccaacagctgcacgggcgctggctcagcgctatggatccatgtcagcgatccgtgaggca
acagtagccgatatggccgagactgagggcgtgggggagaccattgccaaaagcatcgcc
gagtggtttgaggtggaatggcaccaggaattagtccgacgctgggaacacgctggggtg
acaatgaccgaggatcggactggggcgccagcccaagtactagaaggaatcacggtggtt
gttaccggtagcctggacgattttagtcgggacagcgccaaagaagcgattatctctcgt
ggaggcaaagccgcaggcagcgtctcaaagaaaacagatttcgtcgtggtcggcgctaat
gctggtgctaaggaaactaaagccagggatttagggatccgaatcctccgcgaggagcga
tttcacatcctgctggatcagggaccagcagggttagattaa
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