Crassaminicella profunda: K7H06_13645
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Entry
K7H06_13645 CDS
T07525
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cprf
Crassaminicella profunda
Pathway
cprf03030
DNA replication
cprf03410
Base excision repair
cprf03420
Nucleotide excision repair
cprf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cprf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K7H06_13645 (ligA)
03410 Base excision repair
K7H06_13645 (ligA)
03420 Nucleotide excision repair
K7H06_13645 (ligA)
03430 Mismatch repair
K7H06_13645 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cprf03032
]
K7H06_13645 (ligA)
03400 DNA repair and recombination proteins [BR:
cprf03400
]
K7H06_13645 (ligA)
Enzymes [BR:
cprf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K7H06_13645 (ligA)
DNA replication proteins [BR:
cprf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K7H06_13645 (ligA)
DNA repair and recombination proteins [BR:
cprf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K7H06_13645 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K7H06_13645 (ligA)
MMR (mismatch excision repair)
DNA ligase
K7H06_13645 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K7H06_13645 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
RNA_ligase
RNA_pol_A_CTD
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QZY54085
LinkDB
All DBs
Position
complement(2885397..2887433)
Genome browser
AA seq
678 aa
AA seq
DB search
MHLLWYYSGRRIHVNKEEARKKIDELTDLLNEHNYKYYVLDHPEITDYEYDMMINELINL
EKQFPELTREDSPTQRVGGEPLSSFTQVQHNVPMLSLSNSYNKEDLIDFDRSIRKSIGEK
IEYVVEPKIDGLSVNLKYEKGKFIQGATRGNGIVGEDITKNLRTVKTIPLKLKEEIDIEV
RGEVYISRETFVKLNRKQEENGGTIFANPRNAAAGSLRQLDSKVTAKRNLDIFVFNIQRM
ENMNISKHIEGFEYLKSLGFKTSIYEVCKSIEEVVDQCEKWSEKRSSLGFEIDGLVIKVN
DLTQREKLGTRSKSPRWAIAYKFPAEQQKTKVKNIVVQVGRTGALTPTAELDPVRVAGSV
ISRATLHNEDYIKEKDIRIGDTVIIEKAGDVIPAVVRVIFDERTGKEEPFEMPTICPICK
EETFRLEGEAVTRCMNAACPAQLRRGLIHFVSRDAMNIDGLGESIVTLLLENELIKDAAD
LYYLKKEDLLPLERMGEKSAQNLIDAIEKSKKNDLERVIFGLGIKLVGARAAKLLADEFK
SLDGLIKASDEEITAVPEIGHKMAESVVAFFKEDRNLEIVEKLRDVGVNMQSLKENDEED
ENIEKKFEGLTFVLTGTLEKYKRSEAKKIIENLGGRVSGSVSKKTSYVLAGAEAGSKLEK
ANQLGVKVISEEEFEQMV
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgcacctattatggtattatagtggaaggaggatacacgtgaacaaggaggaagcacgc
aaaaaaattgatgaattaacggatttgcttaatgaacacaactataagtactatgtactg
gatcatcctgaaattacagattatgaatatgatatgatgattaatgagctaatcaattta
gaaaaacagtttccagagttgactcgtgaggattcaccaacccagagggttggaggagag
cctttgtcatcatttactcaggtacagcataatgtacctatgttaagtcttagcaattcc
tataataaagaggatctaatagattttgatcgaagtattcggaaaagcattggagaaaaa
atagaatatgttgtagaacctaaaattgatggattgtctgtaaatttaaaatatgaaaag
ggtaaattcatacaaggagctactcgtggaaatggtattgtgggagaagatattacgaaa
aatttgcgtacggtaaagaccattccattgaaactaaaagaagaaattgatatagaagta
agaggagaagtttatatttcccgggaaacatttgtaaaattaaatcgaaaacaagaagaa
aatggaggaactatttttgcaaatcctagaaatgcagcagcaggttctttaagacagctt
gattccaaagtaacagcgaaaagaaacttagatatatttgtttttaacattcaaagaatg
gagaatatgaatattagtaagcatatagaaggttttgaatacctgaaaagcttaggtttt
aaaacttctatatatgaagtctgtaaaagtatagaagaagttgtagaccaatgtgaaaaa
tggtcagaaaaaagaagtagcctagggtttgaaatagatggtcttgtgattaaagtaaat
gatttaacgcaaagagaaaagcttggaacaagatctaaaagtccaagatgggctattgct
tataaattcccagcagagcagcaaaagactaaggtgaagaatatagttgttcaggtagga
aggactggagctttaacgccaacagcagaacttgaccctgtaagagtagcaggttctgtc
atcagtcgagcaacattacataatgaagattatataaaagagaaggatattcgtattgga
gatacggtgatcattgaaaaggcaggagacgtgattccagcagtagtaagagtaatattt
gatgaacgaacaggaaaagaagaaccttttgaaatgccaaccatttgccctatttgcaaa
gaagaaacattccgattagaaggggaagctgttacaagatgtatgaatgctgcttgtcct
gcacaattgagaaggggactgattcactttgtatctagagatgccatgaatattgatgga
cttggagagtctatcgttacattgcttttagaaaatgaattaattaaggatgcagcagat
ttatattatctaaaaaaagaagatcttcttcccttagagaggatgggagaaaaatctgct
caaaatttaatagatgctatcgaaaaatctaaaaagaatgatttagaacgagttattttt
ggtttaggaatcaaactcgtaggagcaagagctgcaaagcttttagcagatgaatttaaa
agcctagatggattgataaaagcaagtgatgaagaaatcacggcggttcctgagattgga
cacaaaatggcagagagtgttgtagccttttttaaagaagatagaaaccttgaaattgta
gaaaagctaagagatgttggtgtaaatatgcagtctcttaaggaaaatgatgaagaagat
gaaaatatagaaaagaaatttgaaggattgacctttgtattaacgggaacccttgaaaaa
tacaagagaagcgaagcaaaaaaaataatagaaaacttaggaggaagggtttcaggaagt
gtaagtaaaaagaccagctatgtattagcaggagctgaggctggctcgaagcttgaaaag
gctaatcaacttggtgtaaaagtcattagtgaagaagaatttgaacagatggtttag
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