Corynebacterium propinquum: I6I69_10155
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Entry
I6I69_10155 CDS
T07335
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cprp
Corynebacterium propinquum
Pathway
cprp03030
DNA replication
cprp03410
Base excision repair
cprp03420
Nucleotide excision repair
cprp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cprp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I6I69_10155 (ligA)
03410 Base excision repair
I6I69_10155 (ligA)
03420 Nucleotide excision repair
I6I69_10155 (ligA)
03430 Mismatch repair
I6I69_10155 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cprp03032
]
I6I69_10155 (ligA)
03400 DNA repair and recombination proteins [BR:
cprp03400
]
I6I69_10155 (ligA)
Enzymes [BR:
cprp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
I6I69_10155 (ligA)
DNA replication proteins [BR:
cprp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
I6I69_10155 (ligA)
DNA repair and recombination proteins [BR:
cprp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
I6I69_10155 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
I6I69_10155 (ligA)
MMR (mismatch excision repair)
DNA ligase
I6I69_10155 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
I6I69_10155 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
HHH
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QQU90570
LinkDB
All DBs
Position
2262946..2265024
Genome browser
AA seq
692 aa
AA seq
DB search
MSDFDEAGLRRRWNELADEVRYHRERYYNEQPEIPDAEFDALLRKLAELEKQHPQLAVPD
SPTMEVGAPVPEESSFANVDHLEPMLSLDNAFTDDELRDWLARTPAPAYLTELKIDGLSV
DLVYRNGQLERAATRGDGTTGEDITVNARVIDDIPHELTGTDEYPVPELIEIRGEVYMNP
EDFAAINEERVRLAEEKGKKPETFANPRNAAAGGLRMKNTEEVKKRRLRMIAHGLGAREG
FAPGSQWDAYQALEAWGLPVSPYTKRVETSAEVLEQVSYWGEHRHDASFEMDGLVVKVDD
LSTQRGLGATSRAPRWAIAYKYPPEEVTTKLLGIEVGVGRTGRVTPYAVMEPVFVAGTTV
SMATLHNQTEVKRKGVLVGDTVVIRKAGEIIPEVLGPVTAQRDGSEYEWSFPKECPSCGS
ILAPQKEGDADWRCPNAQSCPAQLGARLEYLASRKAFDIEALGEKGAHDLIASGVVVDES
DLFAIDEVALTKSSVYTRLDKEDKTKRVVNASGEKLLENLETARQADFWRVLIALSIRHV
GPTAARALATRFGSMQALREADVDKIADVDGVGMTIANSLQDWFGVEWHRAIVDKWAEAG
VTMEVEADQRVEQTLEGLTIVVTGTLEGFSRDSAKEAIVSRGGKATGSVSKKTNYLVAGE
NAGSKETKARDLGVRILSEAEFVQLLDGELID
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgattttgatgaagcaggattgcgtcgccgctggaacgagcttgccgacgaagtg
cgctaccaccgcgaacgctattacaacgagcaaccagaaatcccagatgcggaattcgat
gcgttgcttcgtaagcttgcagaattagaaaagcagcacccgcaactcgcggtgcccgat
tcaccaaccatggaagtcggcgcacccgtcccggaagaatccagctttgccaatgttgat
cacctcgagccgatgctcagcctggataatgcttttaccgacgacgagctccgtgattgg
ctcgcgcgtacgccagctcctgcgtatctgaccgaactgaaaatcgacggtctgtcggtg
gatctggtctaccgcaacgggcagttggaacgcgcagccacccgtggcgatggcaccaca
ggggaggacattaccgtcaacgcccgcgttatcgacgatatcccacacgagctcaccgga
accgacgaatacccggtcccggaacttatcgaaattcgcggtgaggtttatatgaacccc
gaagacttcgccgccatcaacgaagaacgcgtccggctcgccgaagaaaaaggtaagaag
ccagagacgttcgctaacccgcgcaacgcggcggccggtgggctgcgcatgaaaaacacc
gaagaagtgaaaaaacgtcggctgcgcatgatcgcccatggcctgggcgcccgggaaggc
ttcgcgccgggctcgcagtgggatgcgtatcaagcgttggaggcgtgggggcttccggtt
tcgccatacaccaaacgcgtggaaacgagcgccgaggtacttgagcaagtctcgtactgg
ggtgagcatcgtcatgatgcttctttcgagatggatggcctggtagtcaaggttgatgac
ttgtctacacagcgtggtctgggcgctacttcgcgcgctccgcgatgggcaattgcttat
aagtatccaccagaagaagtcaccaccaagctattgggtattgaggtgggcgtcggcagg
accggacgtgtcactccttatgcggtgatggagccggtctttgttgcgggaaccaccgtg
tcgatggcgactctgcacaaccaaacggaagtgaagcgcaaaggggtgttggtcggcgat
accgtggtcatccgcaaagccggtgagattattccggaagtgttgggtccagtgaccgcg
cagcgcgacggcagcgaatacgagtggtcttttccgaaagaatgcccctcgtgcggcagc
atcctggcgccgcaaaaagaaggcgatgctgactggcggtgtccgaatgcacagtcgtgc
ccggcgcagctgggtgcgcgcttggaatacctggcttcccgtaaagctttcgacatcgaa
gcactcggcgaaaaaggcgcccatgatctgatcgccagtggtgtggtggtcgatgagtct
gacctgtttgctatcgacgaagtcgcgcttacgaaatccagcgtctacacccggctggac
aaagaggacaagacgaaacgcgtggtcaacgcgtccggcgagaagcttctggaaaacctc
gagaccgcacgccaggcggatttctggcgcgtgcttatcgcgctgtcgatccgccacgtc
gggcccactgcggcgcgggcattggcgacgcgctttggctccatgcaggcgctgcgggag
gccgacgtcgacaagatcgctgatgtggatggcgttggaatgacgatcgcgaattcgttg
caggattggttcggtgtcgaatggcatcgtgcgatcgtggataagtgggccgaggccggt
gtgacgatggaagtcgaggctgaccaacgcgtggagcagacgctggaaggcctgacgatt
gtggttaccggaacgctggagggctttagccgcgatagcgcgaaagaagccatcgtttcc
cggggtggaaaagccaccggttcggtctcgaaaaagaccaattacctggtggctggggaa
aatgcgggctcgaaagaaaccaaggcgcgtgatctgggcgtgcgaatcttgtcggaagca
gaattcgtgcagcttctcgacggcgaattaatcgattaa
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