Cellulosimicrobium protaetiae: FIC82_008525
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Entry
FIC82_008525 CDS
T08736
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cprt
Cellulosimicrobium protaetiae
Pathway
cprt03030
DNA replication
cprt03410
Base excision repair
cprt03420
Nucleotide excision repair
cprt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cprt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIC82_008525 (ligA)
03410 Base excision repair
FIC82_008525 (ligA)
03420 Nucleotide excision repair
FIC82_008525 (ligA)
03430 Mismatch repair
FIC82_008525 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cprt03032
]
FIC82_008525 (ligA)
03400 DNA repair and recombination proteins [BR:
cprt03400
]
FIC82_008525 (ligA)
Enzymes [BR:
cprt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FIC82_008525 (ligA)
DNA replication proteins [BR:
cprt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FIC82_008525 (ligA)
DNA repair and recombination proteins [BR:
cprt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FIC82_008525 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FIC82_008525 (ligA)
MMR (mismatch excision repair)
DNA ligase
FIC82_008525 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FIC82_008525 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Zn_ribbon_TFIIB
Zn_ribbon_CLPX_N
Motif
Other DBs
NCBI-ProteinID:
QJW38335
UniProt:
A0A6M5ULU5
LinkDB
All DBs
Position
2026626..2029040
Genome browser
AA seq
804 aa
AA seq
DB search
MTDEEVPTAASAAELDEAAAQKRWAELVAQVEADQRAYYEEDQPVSSDAEYDARMHELQA
LEAAHPALQSPESPTQRVGGRAAAGFATVQHLEPMLSLDNAFSEEDLAAWAARAHRDLGV
AADAEVGYLCEVKIDGLAIALLYEKGRLVRAATRGDGRTGEDVTANVRTITSIPQQLAGD
PATHPDVIEIRGEVFMGVADFAALNEKLVAAGQDPYANPRNTAAGSLRQKDPAVTASRNL
RMYAHGVGALQWEAGTHAELERQSAAYALFEQWGVPVSPHNRVVRGLDEVMERIAYFGEH
RHDIEHELDGIVVKVDELALQRRLGATSRAPRWAIAYKYPPEEVNTRLLAIQVGVGRTGR
ATPYAVMEPVKVAGSTVRQATLHNQDVVRAKGVRIGDMVVLRKAGDVIPEILGPVAALAD
DGYPREDFVMPAECPECGTPLRPMKEGDVDLRCPNAESCPAQVRGRVEHIGSRGGLDVEA
LGEVTAAALTQPYEPAEPPLRTEKNLFGLTVEQLAPIKVVVRDPETGLPRPYEGVGESGE
VEMSDGSVLLAKVVRPFQKVAARTYPPGFEDATPAERRAAGVRKDYPVYGPSSTAQTLVD
ELRLARTKDLWRVLVSLNIRHVGPVAARALADWFGSLDAIRAAIRDEGRDALAAVEGVGP
VIADEVIAWLEVDWHQEIVEQWERDGVRFSIPGHPGPGARQAPTGPLAGLTVVVTGSLDG
FSRDGAKEAVIAAGGKSSGSVSKKTDYVVVGANAGSKETKARELGLPILDEEGFVALLAG
GPDAVADRVRTGDAPDEEPAGADG
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
gtgacggacgaggaggtccccacggccgcgtccgccgccgagctcgacgaggccgccgcg
cagaagcggtgggccgagctcgtcgcgcaggtcgaggccgaccagcgcgcgtactacgag
gaggaccagcccgtctcctcggacgccgagtacgacgcccggatgcacgagctccaggcg
ctcgaggccgcgcaccccgccctccagtcgcccgagtcgccgacgcagcgcgtcgggggc
cgggccgcggcgggcttcgcgacggtgcagcacctcgagccgatgctgtcgctcgacaac
gcgttcagcgaggaggacctcgcggcgtgggcggcgcgcgcgcaccgcgacctcggcgtg
gccgccgacgcggaggtgggctacctgtgcgaggtgaagatcgacggcctcgccatcgcc
ctgctctacgagaagggccggctcgtgcgggcggccacgcgcggcgacgggcgcacgggt
gaggacgtcacggccaacgtccgcaccatcacgagcatcccgcagcagctcgcgggcgac
ccggccacgcacccggacgtcatcgagatccgcggcgaggtcttcatgggtgtcgcggac
ttcgccgcgctcaacgagaagctcgtcgccgcggggcaggacccgtacgccaacccgcgc
aacaccgcggcggggtcgttgcggcagaaggacccggccgtcaccgcgagccgcaacctg
cgcatgtacgcgcacggcgtcggcgcgctccagtgggaggccggcacccatgccgagctc
gaacgccagtccgccgcgtacgcgctgttcgagcagtggggcgtgccggtctcgccgcac
aaccgggtggtgcggggcctcgacgaggtcatggaacgcatcgcctacttcggcgagcac
cgccacgacatcgagcacgagctcgacgggatcgtcgtcaaggtcgacgagctcgcgctc
cagcgccggctcggcgccacgagccgtgctccgcgctgggccatcgcgtacaagtacccg
cccgaggaggtcaacacgcgtctcctcgcgatccaggtcggtgtggggcgcacgggccgc
gcgaccccgtacgccgtcatggagccggtcaaggtcgccggcagcaccgtgcgccaggcg
acgctgcacaaccaggacgtcgtccgggccaagggcgtgcgcatcggcgacatggtcgtg
ctgcgcaaggccggcgacgtgatccccgagatcctcggtcccgtcgcggcgctcgcggac
gacggctacccgcgcgaggacttcgtcatgcccgccgagtgcccggagtgcggcacgccg
ctgcgccccatgaaggagggcgacgtcgacctgcgctgccccaacgccgagtcgtgcccc
gcccaggtgcgtggccgtgtcgagcacatcggctcgcgcgggggcctcgacgtggaggcg
ctcggcgaggtcaccgccgccgcgctcacccagccctacgagccggccgagcccccgctg
cgcaccgagaagaacctcttcgggctcacggtcgagcagctcgccccgatcaaggtcgtg
gtccgcgacccggagacgggcctgccgcggccgtacgagggcgtgggggagtcgggcgag
gtcgagatgtccgacggctccgtgctcctggccaaggtcgtccggccgttccagaaggtc
gccgcacgcacctacccgcccgggttcgaggacgcgaccccggccgagcgccgtgccgcg
ggagtgcgcaaggactaccccgtgtacggtccgtcgagcacggcgcagaccctcgtcgac
gagctccggctcgccaggacgaaggacctgtggcgcgtcctggtcagcctcaacatccgg
cacgtaggcccggtcgcggcccgcgcgctcgcggactggttcggttcgctggacgccatc
agggcggcgatccgcgacgagggccgcgacgcgctcgcggccgtcgagggcgtcgggccg
gtcatcgcggacgaggtgatcgcgtggctcgaggtcgactggcaccaggagatcgtcgag
cagtgggagcgggacggggtgcggttctccatccccgggcacccgggcccgggtgcgcgg
caggcgcccaccggcccgctcgcggggctcaccgtcgtcgtcacggggtcgctcgacggc
ttcagccgcgacggcgccaaggaggccgtgatcgcggcgggcggcaagtcgtcgggttcg
gtctcgaagaagacggactacgtggtcgtcggcgcgaacgcgggctcgaaggagacgaag
gcccgcgagctcggcctgccgatcctcgacgaggagggtttcgtcgcgctgctcgccgga
ggcccggacgcggtggccgatcgcgtgcgcaccggcgacgctcccgacgaggagccggcg
ggcgcggacggctga
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