Chlamydia psittaci GR9: B598_0660
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Entry
B598_0660 CDS
T02309
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpsg
Chlamydia psittaci GR9
Pathway
cpsg03030
DNA replication
cpsg03410
Base excision repair
cpsg03420
Nucleotide excision repair
cpsg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpsg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B598_0660 (ligA)
03410 Base excision repair
B598_0660 (ligA)
03420 Nucleotide excision repair
B598_0660 (ligA)
03430 Mismatch repair
B598_0660 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpsg03032
]
B598_0660 (ligA)
03400 DNA repair and recombination proteins [BR:
cpsg03400
]
B598_0660 (ligA)
Enzymes [BR:
cpsg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B598_0660 (ligA)
DNA replication proteins [BR:
cpsg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B598_0660 (ligA)
DNA repair and recombination proteins [BR:
cpsg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B598_0660 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B598_0660 (ligA)
MMR (mismatch excision repair)
DNA ligase
B598_0660 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B598_0660 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
HHH_3
BRCT_2
Nlig-Ia
DUF8054_C
Motif
Other DBs
NCBI-ProteinID:
AFS20739
LinkDB
All DBs
Position
complement(682818..684839)
Genome browser
AA seq
673 aa
AA seq
DB search
MASAAQKELSKYCMQSTYSREQYLSLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSI
EAQHPEWKVLWSPSMRLGDRASGSFPIVAHAHPMLSIANAYTLEELYEFFSRMEKALGYT
PKYTLEIKIDGIAVALRYEQRVLLQALSRGNGRKGEDITANIRTIRTLPLRLSKEAPEFL
EVRGEVFFSRATFRQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEAAQRNLEISIYGSL
AEENKRSHYENLLLCREWGFPVLGQPRQCQTIDEVVASLHEIEALRDQLPMEIDGVVIKV
DDIEDQKVLGMTAKHYRWALAYKYAPERAETILEDILVQVGRTGVLTPVAKLRPVVLSGS
RVSRASLYNEDEIERKDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGSQPWVMPEYCPVC
HGKVTRESDKVSVRCTNPLCSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFDLGCIHRRC
DIFQITEEDLRHVPGFKDKSIRNVLKSIEKAKSVPLDRFLTALGIPYVGIGGANALAQHF
LSLESVMSASLDDLKSVEGIGDKVAESIVAYFNQPEHREEIQIMLSLGVHVLPYRRESSS
CLGKTFVITGSLEKLTRSEAETYIRNCGGKVGSSVSKNTDYLVVGKDPGSKLQKAQELEI
PILSEDELLKILY
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgctgcgcaaaaggagttaagtaaatactgcatgcaaagtacatattccaga
gaacaatatctctctctgtgtaaagatatcgaagaagatgattatcgctattatgttctt
cataatcccacaatctcagattatgactatgatatgaaaatgcggcagcttctttctata
gaagcgcagcatcctgaatggaaggtattatggtctccatcgatgcgtcttggggatcga
gcttcaggaagctttcctattgtagctcatgcccaccccatgctttctattgctaatgcc
tatactttagaagagctttatgagttcttttcccgtatggagaaagcgttggggtatacc
ccgaaatacactctagaaataaaaatagatggtattgccgtagctcttcgttatgagcag
agagtccttttacaagctttaagccgtgggaatggacgtaagggagaggatatcacagca
aatatccgtacgatacgcacgcttcccctacgtttatcaaaagaggctccagaatttcta
gaagttcgaggtgaagtatttttttcacgagcaacttttcgtcagattaatgcggcacaa
aggcaagcggagaaacctgaatttgctaatccaagaaatgctgctggtggcactttgaaa
ttgttgtctgctaaggaagcagcacaaagaaacttagaaatttctatttatggatcgttg
gcagaagagaataagcgatcacattatgagaatctcctgttgtgtagagagtggggattc
cccgtattgggtcagccacgtcaatgccaaactatcgatgaagtcgtcgcctctctccat
gagatagaagctttgcgagatcaacttcccatggaaatcgatggtgtggtgatcaaagta
gatgatatagaagatcaaaaagtcttgggaatgacggcgaagcattatcgctgggcactc
gcatacaagtatgcgccagaacgcgctgaaactattttagaagatatcttagttcaagta
ggcagaacgggagtattgaccccagtggctaagctgcgacctgtagttttgtcaggatct
agagtttctagggcttctctatacaatgaagatgaaattgagagaaaagatatccgtata
ggtgacaccgtatatgtagagaagggcggagaaattattcctcaagttgttggtgtttgc
ctagaaaagcgtccggaaggctcacagccttgggttatgcccgaatactgtcctgtgtgt
catgggaaggtaactcgcgaatccgataaagtttctgttcgttgtacgaaccccctgtgt
tctgcaggagttattgaaaaaatccgctttttttgtggaagagatgctttagatattgat
catcttggtgaaaaggttgttacgaagctatttgatttagggtgtattcatcgacgctgt
gatatttttcaaatcactgaagaagatctccgccatgttccaggatttaaagataaatcc
ataagaaacgtccttaaaagtatagagaaagctaaaagtgtgcctttagatcgttttctt
actgctttgggtattccttatgtgggtataggcggagccaacgctcttgcacaacatttt
ctttctttagagtctgtgatgtctgcctctttggatgatctaaaatctgtagagggaatt
ggagataaagttgcagaatctatagttgcttattttaatcaaccagaacatcgcgaagag
attcaaataatgctttctctaggggtgcatgttttaccttaccgcagggaaagttcttcg
tgtttagggaaaaccttcgtaattacgggcagtcttgaaaaattgacgagatccgaagca
gaaacttacattcgcaattgtggaggtaaggtaggttcttccgtgtctaaaaacaccgac
tatcttgttgtgggcaaggatcctgggtccaagttacaaaaggcccaagaactggaaatt
cccattcttagtgaggatgagctgttaaaaattctttactaa
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