Corynebacterium pseudokroppenstedtii: Q0N40_06600
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Entry
Q0N40_06600 CDS
T10643
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpsk Corynebacterium pseudokroppenstedtii
Pathway
cpsk03030
DNA replication
cpsk03410
Base excision repair
cpsk03420
Nucleotide excision repair
cpsk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q0N40_06600 (ligA)
03410 Base excision repair
Q0N40_06600 (ligA)
03420 Nucleotide excision repair
Q0N40_06600 (ligA)
03430 Mismatch repair
Q0N40_06600 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpsk03032
]
Q0N40_06600 (ligA)
03400 DNA repair and recombination proteins [BR:
cpsk03400
]
Q0N40_06600 (ligA)
Enzymes [BR:
cpsk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q0N40_06600 (ligA)
DNA replication proteins [BR:
cpsk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q0N40_06600 (ligA)
DNA repair and recombination proteins [BR:
cpsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q0N40_06600 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q0N40_06600 (ligA)
MMR (mismatch excision repair)
DNA ligase
Q0N40_06600 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q0N40_06600 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
HHH
Auto_anti-p27
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WPF24228
UniProt:
A0AAU0PUX9
LinkDB
All DBs
Position
complement(1552098..1554185)
Genome browser
AA seq
695 aa
AA seq
DB search
MNNSGNSTDVSTDLQAYWNQLAVDVRHHRDLYYNSEPVISDAEFDHLFKTLQDLEADHPE
LAKNGSPTEEVGAPVPPPTQTSAGEVTFAPVRHIERLYSLDNVFSKSELLEWLHRTPAPT
YLTELKIDGLSIDLVYRDGELVSAATRGDGVTGEDITPNARTISDIPQTISPTDEYPVPA
LLEVRGEVFIGVEEFAVINADRVEQGRKPFANPRNAAAGSLRQKNPAETAKRNLSMICHG
IGAREGWEPATQHDAYTALAAWGFRVSPYTKRVTSADEVIAQMEYWGEHRHDATHEMDGL
VVKVDDLAEQEDLGETSRAPRWAIAYKYPPEEVVTTLRDIRIGIGRTGRATTYAVLDPVL
VAGSTVARATLHNPSEVHDKGVLIGDRVTIRKAGEVIPEVLGPVADARDGSEKPFVFSTV
CPECGTPLVQAKADDADWRCPNTQGCPGQLLARMTYLAGRSAFDIDALGVSGIQDLIRSG
ALTNESELFDLDESHLLMTSVFTTKAGKVNATGKALLKNLEEAKSTDLWRVIVALSIRHV
GPTAARALATKYGSLDAIRNASEEELARIDGVGSIIAASLRSWFAVDWHIRIVDAWAAAG
VRMEEDQQQAQPQTLEDMTVVVTGTLEDFTRDSAKEAIISRGGRAAGSVSKKTDYVVVGA
NAGSKETKARDLGLRILDEDGFKELLETGRVSDPA
NT seq
2088 nt
NT seq
+upstream
nt +downstream
nt
gtgaataattccgggaattccactgacgtgagcaccgatcttcaagcgtattggaaccaa
cttgctgttgatgttcggcaccaccgtgacctctactacaacagtgagcccgtgatctcg
gatgctgaattcgatcaccttttcaagaccctccaagacctggaagccgaccatccggag
ttagccaagaatggttcaccgacggaagaggtgggcgcgcccgtcccgccccctacccag
accagcgctggcgaagtgacctttgccccggtccgccacatcgagcgcttgtacagcctg
gacaatgttttttcgaagtcagagttgctggaatggctgcatagaacccccgcgccgacg
tacttgacggagctaaagatcgacggtttatccatcgatctggtctatcgtgatggcgaa
ctcgtctctgccgccactcgaggcgacggcgtcaccggcgaggacatcactccgaatgcc
cggacgatctccgatatcccgcaaacaatttctccgacggacgagtatcccgtaccagcg
ttgctggaagtgcgcggcgaagtgttcattggcgtcgaagagttcgccgtcattaacgcg
gaccgcgtggagcaaggccggaagccttttgccaacccacgcaatgccgcggcgggatcc
ttgcgccaaaagaaccccgcggaaaccgctaagcggaacctgtcgatgatctgccacggg
atcggagcgcgcgaaggctgggaacctgcgactcaacatgatgcgtacacagccttggcc
gcgtggggtttccgagtatcgccgtacaccaagcgtgtgacttcggccgatgaggtcatt
gcgcaaatggagtactggggcgaacaccgtcacgatgcgacccacgaaatggacggatta
gtcgtcaaagttgatgacctagctgagcaggaggatttgggcgagacctcgcgcgctccc
cggtgggctattgcctacaaatatccgcccgaagaggtcgtgacgacgctgcgcgatatt
cgtatcggcatcggtcggactggtcgcgcgacgacgtacgccgtgctggatcctgtcctg
gtggctggctcaacggttgctcgggcgacgttgcacaacccatcggaagtccacgacaaa
ggtgtgctgatcggcgatagggtcaccatccgcaaggctggcgaggtcattcccgaagtc
ctgggcccggtagcggatgcgcgtgacgggtccgaaaaaccattcgtgttctccactgtc
tgccctgagtgcggcacaccgttggtgcaggccaaggcggatgacgccgattggagatgc
cccaatacacaagggtgccccggtcagttgctcgcccggatgacgtatttggccggccgg
tccgccttcgacatcgatgcactgggcgtgtcgggtatccaggatctgatcaggtcggga
gcgttgacgaatgaatctgagctctttgatctcgatgaatcgcatcttctgatgacctcg
gtgtttaccaccaaggccgggaaggtcaatgcgacgggtaaagcgttgctaaaaaacctc
gaggaagcgaagtccaccgacctgtggcgggtcattgtggcgctctccattcgtcacgtg
ggccccacagctgcccgcgcgctggccaccaagtatgggtctctcgacgccattcgtaac
gcgtccgaggaagaactcgcccggatcgatggagtaggcagcatcatcgcggcgtcgttg
cggtcatggtttgccgtcgattggcatataagaattgtcgacgcctgggctgcggccggt
gtccgcatggaggaagaccagcagcaggcgcaaccccagaccttggaggatatgactgtc
gtcgttacaggtactttggaggatttcacgcgcgactcggcgaaggaagcgattatctcc
aggggaggccgggcagcggggtccgtgtccaagaagacggattatgtcgtggtcggggct
aatgctggatcgaaggagacgaaagcgcgggacctcgggttgcgtattctcgacgaggac
ggttttaaagagcttttagaaacaggccgtgtgagtgaccctgcttaa
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