Chlamydia psittaci NJ1: B712_0663
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Entry
B712_0663 CDS
T02252
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
cpsn
Chlamydia psittaci NJ1
Pathway
cpsn03030
DNA replication
cpsn03410
Base excision repair
cpsn03420
Nucleotide excision repair
cpsn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cpsn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B712_0663 (ligA)
03410 Base excision repair
B712_0663 (ligA)
03420 Nucleotide excision repair
B712_0663 (ligA)
03430 Mismatch repair
B712_0663 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cpsn03032
]
B712_0663 (ligA)
03400 DNA repair and recombination proteins [BR:
cpsn03400
]
B712_0663 (ligA)
Enzymes [BR:
cpsn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B712_0663 (ligA)
DNA replication proteins [BR:
cpsn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B712_0663 (ligA)
DNA repair and recombination proteins [BR:
cpsn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B712_0663 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B712_0663 (ligA)
MMR (mismatch excision repair)
DNA ligase
B712_0663 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B712_0663 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
HHH
DNA_ligase_ZBD
HHH_3
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AFS28173
LinkDB
All DBs
Position
complement(691669..693690)
Genome browser
AA seq
673 aa
AA seq
DB search
MASAAQKELSKYCMQSTYSREQYISLCKDIEEDDYRYYVLHNPTISDYDYDMKMRQLLSI
EAQHPEWKVLWSPSMRLGDRASGSFPIVAHAHPMLSIANAYTLEELYEFFSRMEKALGYT
PKYTLEIKIDGIAVALRYEQRVLVQALSRGNGRKGEDITANIRTIRTLPLRLSKEAPEFL
EVRGEVFFSRATFRQINAAQRQAEKPEFANPRNAAGGTLKLLSAKEAAQRNLEISIYGSL
AEENKRSHYENLLLCREWGFPVFGQPRQCQTIDEVVASLHEIEGLRDQLPMEIDGVVIKV
DDIEDQKVLGMTAKHYRWALAYKYAPERAETILEDILVQVGRTGVLTPVAKLRPVVLSGS
RVSRASLYNEDEIERKDIRIGDTVYVEKGGEIIPQVVGVCLEKRPEGSQPWVMPEYCPVC
HGKVTRESDKVSVRCMNPLCSAGVIEKIRFFCGRDALDIDHLGEKVVTKLFDLGCIHRRC
DIFQITEEDLRHVPGFKDKSIRNVLKSIEKAKTVPLDRFLTALGIPYVGIGGANALAQQF
LSLESVMAASLDDLKAVEGIGDKVAESIVAYFNQPEHREEIQTMLSLGVHILPYRRESSS
CLGKTFVITGSLEKLTRSEAETYIRNCGGKVGSSVSKNTDYLVVGKDPGSKLQKAQELDI
PILSEDELLKILY
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgctgcgcaaaaggagttaagtaaatactgcatgcaaagtacatattccaga
gaacagtatatctctctgtgtaaagatatcgaagaagatgattatcgctattatgttctt
cataatcccacaatctcagattatgactatgatatgaaaatgcggcagcttctttctata
gaagctcagcatcctgaatggaaggtattatggtctccgtcgatgcgtcttggggatcga
gcttcaggaagctttcctattgtagctcatgcccaccccatgctttctattgctaatgcc
tatactttagaagagctttacgagttcttttcccgtatggagaaagcgttggggtatacc
ccgaaatacactctagaaataaaaatagatggtattgccgtagctcttcgttatgagcag
agagtccttgtacaagctttaagccgtgggaatggacgtaagggagaggatatcacagca
aatattcgtacgatacgcacgcttcccctacgtttatcaaaagaggctccagaattccta
gaagttcgaggtgaagtatttttttcacgagcaacttttcgccagatcaatgcggcacaa
aggcaagcggagaaacctgaattcgctaatccaagaaatgctgctggtggcactttgaaa
ttgttgtctgctaaggaagcagcacaaagaaacttagaaatttctatttatggatcgttg
gcagaagagaataagcgatcacattatgagaatcttctgttgtgtagagagtggggattc
cctgtatttggtcagccacgtcagtgccaaactatcgatgaagtcgttgcctctctccat
gagatagaagggttgcgagatcaactccccatggaaatcgatggtgtggtgatcaaagta
gatgatatagaagatcaaaaagtcttgggaatgacggcgaagcattatcgctgggcactc
gcgtacaagtatgcgccagaacgcgctgaaactattttagaagatatcttagttcaagtg
ggcagaacgggggtattgaccccagtggctaagctgcgacctgtagttttgtcaggatct
agggtttctagggcttctctatacaatgaagatgaaattgagagaaaagacatccgtata
ggtgacaccgtatatgtagagaagggcggagaaattattcctcaagttgttggtgtgtgc
ctagaaaagcgtccggaaggctcacagccttgggttatgcccgaatactgtcctgtgtgt
catgggaaggtaactcgcgaatccgataaagtttctgtccgttgtatgaaccccttgtgt
tctgcaggagttattgaaaaaatccgctttttttgtggaagagatgctttagatattgat
catcttggtgaaaaggttgttacgaagctatttgatttagggtgtattcatcgacgctgt
gatatttttcaaatcaccgaagaagatctccgccatgttccaggatttaaagataaatcc
ataagaaacgtccttaaaagtatagagaaagccaaaactgtgcctttagatcgttttctt
actgctttgggtattccttatgtgggtataggcggagccaacgctcttgcacaacagttt
ctttctttagagtctgtgatggctgcctctttggatgatctcaaagctgtagagggaatc
ggagataaagttgcagaatctatagttgcttattttaatcaaccagaacatcgcgaagag
attcaaacaatgctttctctaggggtgcatattttaccttaccgtagggaaagttcttcg
tgtttagggaaaaccttcgtaatcacgggcagtcttgaaaaattgacgagatccgaagcg
gaaacttacattcgcaattgtggaggtaaggtaggttcttccgtgtctaaaaacaccgac
tatcttgttgtgggcaaggatcctgggtccaagttacaaaaggcccaagaactggacatt
cccattcttagtgaggatgagctgttaaaaattctttactaa
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